SimpleSearch - Line and FST details
Line specific information
| Line ID | 346C11 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N433155) |
| Segregation Analysis | 50:39:14 |
| Confirmed for Hit | At2g48160 At3g41768 |
| Parent of DUPLO pair | 12250 |
| Parent of pair(s) | none |
Gene hit At2g48160
| Sequence (A. th genome BLAST matches underlined) | >83-K016234-022-346-C11-8409 TGATCCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATTGGTTCTCGAATATCG GCTGTCTGTTGGGAATCAACAGATCGCCGCTGGTTCCTGTATGGGATCGCTCCCTATCAT GAGAGCCCTTCTGATATCATTTCTATGCGTAGATACTTCTTTCAGGTGAAGAATCTAAAT TCTTTGAAGTGTCTGCTAAGCTCTCAGGGGACATGGTCAATGAATCACCATCTCCCGTGG AGAAATCTCATGATGGAATGTCTCCATCTGAGGCTTGCGTTCAGACTGTGAGAGAGAGAG AATATGCTATGGGGTGGAATGAGCTTAGCAAGACACCAGATGATAAATCAGCTGGACCCC AATATAATCAAGTTAGCAGTTTGCCAGCTGGCGAAGCTCAGACAGCTATGGGATCTCCCT AAATAGTGAGANNNNNNNNGNNNNNCNNTNNANTCNNGNNNGATCCGNNCTTTCAGCCAA AGCTTCCAAACCTATAAATANCAAACAGGTTGAGAAACAATAACGATCCGAGAGAGCTA |
| GenBank Accession | AL952823 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:19694260 - go to primer design |
| BLAST e Value | 3e-112 |
| Hit Clone Code (BAC ID) | F11L15 |
| Hit Gene Code | At2g48160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Tudor/PWWP/MBT domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g41768
| Sequence (A. th genome BLAST matches underlined) | >83-K016240-022-346-C11-8409 TGTCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATGGCTTCTGAATCACGGCG TCTGTTTGGGAATCAACGTGATCGCAGTTCGCTATCTCCTATGGGATCTNCCCTATAGTG ACGTACTTTCTTGATTCTATGGGTGGTGGTGCATGGCCGTTCTTAGTTGGTGGAGCGATT TGTCTGGTTAATTCCGTTAACGAACGAGACCTCACCCTGCTAACTATGTAATCGGCGGTA TCCCTTGACGGACGGCTTCTTATAGGGACTATGGCCGTTTATGCCAAGGAAGTTTGAGGC AATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTGATGTAT TCAACGAGTTCACACCTTGGCCGACAGGCCCGGGTAATCTTTGAAATTTCATCGTGATGG GGATAGATCATTGCAATTGTTGGTCTTCAACGAGGAATTCCTATGGGATCTCCCCCAATA GGGAGAANCNATGTTGCTTCTCACGGTTCCTTCAAAGAGGACAGGTTCTTGCGGAATGAT TCCGAATCTTGACCTGAGATCATGTAGCCCTATGGGATCC |
| GenBank Accession | AL952824 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:14198861 - go to primer design |
| BLAST e Value | 7e-163 |
| Hit Clone Code (BAC ID) | F21A14 |
| Hit Gene Code | At3g41768 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | rRNA |
| Insertion Classification | TS2TE |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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