SimpleSearch - Line and FST details


Line specific information

 
Line ID 347E12
Vector Used pAC161
Line Availability available as T3 set from NASC (N433276)
Segregation Analysis 50:40:39
Confirmed for Hit At1g52630
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit F16M22

 
Sequence (A. th genome BLAST matches underlined) 
>93-K016241-022-347-E12-8409
TGTCCTGAAATTTCCCGGACATGAAGCCATTTACATTGAATATATTTACGTGAAGCCATT
GCTGATCCAATATGTCAATTTACGTAGTGAGTCACTGTCTTAATCTTGTGTCATCCTCTA
TTCTCCTTAAAATTCTCCTCCTCAAACCATGAGATGAACAACCAAAAACAAGATTAGATC
GGATCCAACCTCTCCCTAAAAAATTGATGAAGATCGTTTCACGACCCGATCCACACCACA
AAAACCCAATAACCAAGATGAGATCCCCATATAGGGCCAAGATACCACCATTGAAGTACA
TCCTAAGCACACCAGCCAATTCCACTATGGGATCCTCCNTTATATGCAGATGGGATCCTC
CCNNAATAGTGAGANANNCNNNNTGACATNACCCCTCACTTTATTGAAGTGTGCATGAGG
ACCGAGGGCCCAAAAGTACTTATGTTCGTGGGGAGTTTCTTAGGTACAATAGATGGTCTT
GCCCGTATGACATCTGAGAGCGCAATGTCGATCTTTGCGAAATCAGCAAGGGTGCCTAGC
TGCACCACGCTGTTAGAGGTTAGACTTGAGATGTGTGAGCAGAGACACACTTTGTCTCTT
GTGAGCCAAGGATCGACCGGCCTCATCCTTCATGGATCTCATGTGAAGGCTGGACATCTA
TGAGAAAAGGAGAACAATCCCTATGCCATCCTCCCTACTAGTGAGGCCGGGCGGACATGG
GGCCTGCATAGAACCCTATGGGGAGGGCCCCAAAAAGGGGACTGCCAGCTC
GenBank Accession AL952987 [GenBank]
Graphic View Graphic view of sequence AL952987 of line 347E12
Predicted Position of Insertion Chr1:21602495 - go to primer design
BLAST e Value 2e-95
Hit Clone Code (BAC ID) F16M22
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g52630

 
Sequence (A. th genome BLAST matches underlined) 
>93-K016235-022-347-E12-8409
TGATCCTGAAATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGATATGCGTCAC
TATTGATGGACACGCGATAATCCAATGCAGCTTTTGTGTTTCCATGCATTCTGGTGAAAT
CCTCTTGGTTAAGCAGAACAGACTTTGTGAACACATTTGTATAAACGGATGTGAATCCTT
ACATCTCCATTAGACCGTCTCCAGCTGCTAAGTATATGTTTGTGCTTGTTGGGATGTTAA
GTGACTGAAGCATCAACACTGTTTCATTAGGAGTCAGAGGGCATTTGCCTCGCTTTCTCC
ATGTCTGAGCTATGGGATCCCCCCTATAGTGAG
GenBank Accession AL952986 [GenBank]
Graphic View Graphic view of gene At1g52630
Predicted Position of Insertion Chr1:19606695 - go to primer design
BLAST e Value 1e-139
Hit Clone Code (BAC ID) F6D8
Hit Gene Code At1g52630 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation O-fucosyltransferase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37