SimpleSearch - Line and FST details
Line specific information
| Line ID | 349B01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N433421) |
| Segregation Analysis | 50:49:49 |
| Confirmed for Hit | At3g47980 |
| Parent of DUPLO pair | 9012 |
| Parent of pair(s) | none |
Gene hit At1g04820
| Sequence (A. th genome BLAST matches underlined) | >02-K016248-022-349-B01-8409 GATCATGACATTNCCNGGACATGAGCCATTTACAATTGATATATCCTGATAACACACGAG CCTTTTACTTCATTACACGTGTCAGTTATATACAGATGGGTACTTCCCTTTATAATTACT CGTACAAACGCCTTAGTAACAAACTATGGGATGCCTCCCTATCTCGAGATAAGGGATTTT GGTCATGAGATTATCAAAAAGGATCTTCACCTATGGGATCCTCCCTATAGTGAGANAACN NNNNNNNNCCCCCTNAGCATCACACAACAAGACTGGTTACCCCCCTTACCTACACAAAAA CGGCCCCTACAACCAAATTACCCACAACCCAACTGCCTGGTGCAACCCCCCAACATATTT CTTACTCCACCCCACAAAATGGCCCAATAAACAACCAACGACGAGATGACACTCGCATCT TTGTTCCTGCGCCCCCTCTGCGAACGCGAAACTCAACCAGGCCGCGCAACCCCCTCTCCA GGAGAGTACACCACCACTAACAAAAAACCCGAAACCCGAACGCTCCTGGGCATCCCCCCT AAAACCCCCCCGCCCGAATCATAACCACCTTGTAACCGCCCTCAAGCATATAATCCCCAA CACAAACCCCCCCTAATCAGAGTGTCCCACACCAAACCACCCTCTTCATTCAACCCCTAC CCCATCCAACCCGGGTTACCATATCTTATATACCCTAAATACAA |
| GenBank Accession | FR808514 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1358460 - go to primer design |
| BLAST e Value | 2e-08 |
| Hit Clone Code (BAC ID) | F13M7 |
| Hit Gene Code | At1g04820 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tubulin alpha-4 chain |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At3g47980
| Sequence (A. th genome BLAST matches underlined) | >02-K016244-022-349-B01-8409 CTCCCTATGGTGACGAGCTCAAATAGGTTGTGCAGCCATTGGAGTGTTGGCGTTCTCCGC CTTTGGGCCAAGCTGGCTATGGGATCCTGCCTATAGTGAGATGGGCTTGCCGGTTTGTAG ATTGTTGAGAGTCATATCTCGTGTCACCTCCACAGGCTTCACGTGCCTCATTACCTCATC CTCCACCTGCCTCTGACATGCCGCCAGCTCACATTTCTTCTCAAATAGCGGTTCCCGTGA GTCCTACATCTCCGGTCCAGGGCCTATCCCAACCGTCGACTATGCCTGGTAGTACTTCCT CTCTATGCTCCTCAGTGAGGATGCTTTCTTCTCCAGCTCCTTTCCTGCACTCTCCGTGCG TTTCTTCATCTTCACCTCTTCCGCCTGCTTTATTGATATCACATGCTACAACGTTTACAA AGCTCTTTCTGGCTCCTGACGCCACTGTGTCAGGAACTCGTTCCAGG |
| GenBank Accession | AL953174 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:17711750 - go to primer design |
| BLAST e Value | 2e-27 |
| Hit Clone Code (BAC ID) | T17F15 |
| Hit Gene Code | At3g47980 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Integral membrane HPP family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g02110
| Sequence (A. th genome BLAST matches underlined) | >02-K016244-022-349-B01-8409 CTCCCTATGGTGACGAGCTCAAATAGGTTGTGCAGCCATTGGAGTGTTGGCGTTCTCCGC CTTTGGGCCAAGCTGGCTATGGGATCCTGCCTATAGTGAGATGGGCTTGCCGGTTTGTAG ATTGTTGAGAGTCATATCTCGTGTCACCTCCACAGGCTTCACGTGCCTCATTACCTCATC CTCCACCTGCCTCTGACATGCCGCCAGCTCACATTTCTTCTCAAATAGCGGTTCCCGTGA GTCCTACATCTCCGGTCCAGGGCCTATCCCAACCGTCGACTATGCCTGGTAGTACTTCCT CTCTATGCTCCTCAGTGAGGATGCTTTCTTCTCCAGCTCCTTTCCTGCACTCTCCGTGCG TTTCTTCATCTTCACCTCTTCCGCCTGCTTTATTGATATCACATGCTACAACGTTTACAA AGCTCTTTCTGGCTCCTGACGCCACTGTGTCAGGAACTCGTTCCAGG |
| GenBank Accession | AL953174 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr1:395461 - go to primer design |
| BLAST e Value | 1e-170 |
| Hit Clone Code (BAC ID) | T7I23 |
| Hit Gene Code | At1g02110 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | bZIP domain class transcription factor (DUF630 and DUF632) |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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