SimpleSearch - Line and FST details
Line specific information
| Line ID | 351H05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N433689) |
| Segregation Analysis | 50:49:47 |
| Confirmed for Hit | At1g49120 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At1g49120
| Sequence (A. th genome BLAST matches underlined) | >40-K016250-022-351-H05-8409 CTCGTTTTTGTAATCTAAGTAATTAACCTCGCTTTGATTTTGATTTATTCTCTTTCTATG GGATATCCCTATGAAGACGTATGCTTGAACGGCCAACGGTATGAGCACAATGCTACAATC TTTGAGTACAAGTTGTTAGATATTCGGTTTGGCCCATGCAATAACTGCTGATATAAAGAG ATTTACCTCTTAAGAGAAGCTTTTACTAAGCTTGCATCATCTACTGTGGAAATAACTTCT ACTGAATTGTAACCCACCCAAATATCATTAGCTTGACGACCCAATCAGCAAATACCCACT ATTGGCGATGTCATCAACGGATCTTCCAGCATTTTACTAATCACTCCCTCTTCTTCTGAT CAGAGTTATAACCACAACCAGATGGCTTCTGATCAGTAACAATTCTCTTATTTACCTTTT TGCAATTCGACTTCTCAGGAACTTCCTTCTCTTCTGGTTTACGTACACCGCACGGCTTGG TCAAATCTACTATGGGATCCTCCCCTATAATGAG |
| GenBank Accession | AL953529 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:18174346 - go to primer design |
| BLAST e Value | 1e-93 |
| Hit Clone Code (BAC ID) | F27J15 |
| Hit Gene Code | At1g49120 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Integrase-type DNA-binding superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g58060
| Sequence (A. th genome BLAST matches underlined) | >40-K016246-022-351-H05-8409 GCCTGTGGAGCGTAGAGGAAATATCGTTTTTGTAATTAAGTAATTAACCTCGCTTTGATT TTGATTTATTCTCTTTCTATGGGATCCTCCCTATAGTGAGAAACAAGACCGGCCCACGGT ATACAGCCCAATACTATTTTCTTGTAGGTACTAGTCGTGGGTTATTTCATCTAGGTTTCT GTAAATATCTGGTGATTCCACAAGATTTGCTCAATACATATGCTCCTCCTCATGGTCGGA TGATATAGCAATAAACACTATGATTCTTATATACCAAACCTACTAATTCCAAATTCGAAC TGTATAGGTCATACTGCACTCAATTGTCTGTAGGCTGAAGCAGAAAGCTTTTTCCTAGAA GGTATTCTANATCCACGTTCTTCCTCTATTTATCTACCCCAACAATAACATGCAGTAGTT CCTCTATCAATCAACAACACTTATAAGCCTGCTAAATCAACCACCCTTTCTAACGTGTTC ACCAACTATGCTCAGAGATCGAGACAGGGAAAAAAGGAAACTAAATCTATAAGCAATTTC TATGGGATCTCCCCNAATAGTGAGACANGNCCNNCNTTNGAATCTTTGACTCCCGGGGAA GTGGG |
| GenBank Accession | AL953528 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:23500150 - go to primer design |
| BLAST e Value | 4e-130 |
| Hit Clone Code (BAC ID) | K21L19 |
| Hit Gene Code | At5g58060 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | SNARE-like superfamily protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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