SimpleSearch - Line and FST details


Line specific information

 
Line ID 355F06
Vector Used pAC161
Line Availability available as T3 set from NASC (N434050)
Segregation Analysis 50:48:48
Confirmed for Hit At1g48410
Parent of DUPLO pair none
Parent of pair(s) 2839, 3336
Note

Gene hit At1g48410

 
Sequence (A. th genome BLAST matches underlined) 
>46-K016870-022-355-F06-8409
TGATCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGATATATGCCCAGT
TGATCTACGGAAGGCTATGAGCAACTCCCTGTTCAAAAGTAAGGGGAGAAACGTACAGAT
CTGTTACTTAAGAGCAAGCTAAAGCTAAAACCCAATCACGAAAATATTAAATAACATCCA
CACGTACTTTATCATGCCACCAGTCACCACACCTTTCTGAGGATCCTTCCACTCTTTGAA
CAGATCCTGAATGAGCTCCTGCCTATGCGCTTGAGCGCAAACTAATCCAGCATATTTAGT
GATTTCAGGCCAATCCTGAGATGCCACAACCTGAAAACAAAAATTTCGTTGTCAACAAAA
CAAGCACAATTTGAAAAGGTTAAGGCCATGAAAATAAACAAAAGCATCCATATACAGAAG
TAGATCTTAAAGGAGAAGCTAACTTACAGCAGCAATAGATGGGCTTGAATCCTCTCCAGG
GTGAGGGTGGGTAACATCAGCACCAAATATAATGGTGGGTCGATCACTCACTATGGATCC
CCCCTTTAATGGAGGAGGNGNTTCTCCGACTCCCCCTTTGATTGTAGGGGAAACGGTGGT
GTTCGGCGACACTCCCAAAAAGTTAGAGCTAAGATCACAATAGGAACCGGGGGAATCCTA
TACTAAGGCACGCTTTATTTTTCAAGTTTTCTCTAGGTCACCGAGAAGCTAGACCAGATC
CAATCTATGAGGCTACCTGCTCTTTCTCA
GenBank Accession BX001385 [GenBank]
Graphic View Graphic view of gene At1g48410
Predicted Position of Insertion Chr1:17887470 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F11A17
Hit Gene Code At1g48410 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Stabilizer of iron transporter SufD / Polynucleotidyl transferase
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g16320

 
Sequence (A. th genome BLAST matches underlined) 
>46-K016831-022-355-F06-8409
TGTCATGANATTTCCNGGACATGAAGCCATGATACGTTTGATGAAGCTATGGGATCCTCC
CTATACTGAGAATTTGGAGAGCAGTATCATGATCCTTACGCTAACTGTAACAGTTGTCAA
CTGCACACCAGAAATTCATATTGCGACCACAGACATTACAGAAAAAATACAAGCGAAGAG
AAAGGTCTGCAATTGCAGATTTTGAAATGCTATGGGATCCTCGCTATAGTGAGAGAATAT
CAGAACTATGTCCTCACTGATTTCGATCCCTCCAGGGGGACAAGTGGTTGTAGATGCCAA
CACAGGGAATCGCGTATTGTGAGATACAGCTGGCAATAAATACGAGTTGACACTCATCAG
GACCGAGCTTCTTGTTCATTTGCGGATGCATGTTGAGTGATATTTCTGGGGTTTGTGCAG
GTCAACAATACTATA
GenBank Accession BX001384 [GenBank]
Graphic View Graphic view of gene At3g16320
Predicted Position of Insertion Chr3:5533369 - go to primer design
BLAST e Value 4e-41
Hit Clone Code (BAC ID) MYA6
Hit Gene Code At3g16320 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Tetratricopeptide repeat (TPR)-like superfamily protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 355F04


Last Updated on 10.06.2021 13:37