SimpleSearch - Line and FST details
Line specific information
| Line ID | 356G08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434160) |
| Segregation Analysis | 50:50:19 |
| Confirmed for Hit | At1g68570 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6310, 91337 |
| Note |
Gene hit At1g68570
| Sequence (A. th genome BLAST matches underlined) | >63-K016871-022-356-G08-8409 TGATATGAAATTTCCCGGACATGAAGCATTTACATTGAATATATCCTGGATCATTGACCT ATTATTGCTCTCCTTTTCTCCTTAAAGGTTTCATTTTTAACCCTCGTTTAAGAATTTTGC TTTGATGAGGATGATCCAAATTATTTCTTTCTGGGGTAAGGCCTATGGGATCCTTCCTAT AGTGAGATACATTGAAGAGCAGAGTTTGCCAAATAATAAGAAATGTGCAACCATTTTAAA TTTAATTTGGTGAAAATGTTTAGTCATAGTTAGCTTTTAGAAAATAAAAATAAATGAAAA CTCTACAACTACTCTTAGTTTTATATTTTACAAATTGAGCAAGACAAGTAAGTGACAAAT GATTTGTTTTTATGCCACCCATCATATTACTATTAATTATCTAAATCTTACTATTTTCGA AATAGGTCCAATAATAAAATTATTTCTGCATATACAGTATATGCC |
| GenBank Accession | BX001529 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:25749197 - go to primer design |
| BLAST e Value | 2e-129 |
| Hit Clone Code (BAC ID) | F24J5 |
| Hit Gene Code | At1g68570 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Major facilitator superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At1g56180
| Sequence (A. th genome BLAST matches underlined) | >63-K016833-022-356-G08-8409 AACAAACTCCTTCCAAATCCCAGCCGGTTCAATGTCCGTCTTCACAACCGTCGCTATGCT TACCACAATCATCTTCTACGACCGCGTCTTCGTCAAAGTCGCTCGCAAATTCACCGGTAG CTCATTTGATAGGTGATTATTAGTCAAGGTGTTGTTCTCTCCCTCTGAGTTTTCTCTCAT TCACAAACCTAATGCTGGTTCAGTTTCTCTTAGGTATAGCATGGTACTATTTGCTGGTAT TGCAGCTGAAGCGCTATGGGATCCTCCTTATAGTGAGATNGNNTACACCATGAAATCTTT AAAAATTATAAAAAAGGTTGGTTAATGTTTCGAACCCAAATATAACTGGATGCAAGGGGA ATGATTAAGAATAAGAACTTAATCCGCATTCCGATCTTATAGGCCTAAGAAAGGTTTCCT TGTTAGAGCCTCCAAAGCCAAAGACCTTTACGGAGTTGGGGTACACCTATGAAAGCTATA AAAAGTAATGGGATCCCCCTTTAAGGGGAGAGCCCCGGACCCCCAATGCGGCCCCCGGGG TATGTCAACCGAGGGGGAGGGGGGGGGGAACGCAGGAGAATAAAAGAAAGAGAGGATGTA GGATATGAGAGAGAAGGAGAAAACACGGGAAAGTGGCCTCACACGTGTGTCTGGTGTACT TCAAGAAACCCGCCCGGAGGACGGATGAGAGAGAAAATGGGAAAAGGA |
| GenBank Accession | BX001528 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:21026925 - go to primer design |
| BLAST e Value | 1e-74 |
| Hit Clone Code (BAC ID) | T6H22 |
| Hit Gene Code | At1g56180 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ATP-dependent zinc metalloprotease |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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