SimpleSearch - Line and FST details
Line specific information
| Line ID | 358A06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434278) |
| Segregation Analysis | 50:39:32 |
| Confirmed for Hit | T1B9 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 97284, 97285 |
Gene hit At5g50770
| Sequence (A. th genome BLAST matches underlined) | >41-K016873-022-358-A06-8409 GGACATGAGCATTTACATTGAGCATGTCACTCCTATGGGATCCTCCCTATACTAGAGTTC AAGTCCAAATGGTCATCTAATAACTCACATTTGAAGCATAGTTGTCCATTGATAAGTGTC CAAGCACCCTATGGGATCCTCCCTATAGTGAGACACTCTATTTTTTTGCAGACATCCATG ATGTCTCTAAGGCTTCACCGGCTATGGGCAAGTTACTCCGACCAAACATCTCTCTAAAAA AATAGTTTTGTACTATCCGGTTGAGAGAAGTTTTGTTTTTCTTTGCATAGGACCTCAACT TTTGGGGATCTGTGTATTGCACATTTTTTGCTTCTCCATACCTATTTTTTTTTATAGGAC CGACCGCGGCGATTGCTTCTGGATGTGGATACATTGCTTCACCTATGGGATCCTCAATAT AATGAGATGCCCGGGGGTCTTCTGAGACTGTATCTTTGATATTTTCGGAGTAGACGAGCG AGACTTGCTCCACCATGTTGACGAAGATTATCCTCTTGACATTGAGTCGCAAGAGACTCT CGATGAACTGTCCTACAGTCTTTACCGCGAGTTCTGACTACACCTCTATTTGGATCCCTT AACTCCGTGGGAATAGGGGATCCTC |
| GenBank Accession | BX001687 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:20648026 - go to primer design |
| BLAST e Value | 1e-62 |
| Hit Clone Code (BAC ID) | MFB16 |
| Hit Gene Code | At5g50770 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | hydroxysteroid dehydrogenase 6 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit T1B9
| Sequence (A. th genome BLAST matches underlined) | >64-K118365-0022-358-A06C-8409 TCATTGAATATATCCTGTTTACATCGACAATGGCCTTTTTGCTGCTACTCGCGTTCTCAA CATCACGAACCGTTTCAAGCCCAGATTGCTTAGAAGGTAACTGATCATGGTTAACATCCT CACTTTTCATTGTAATCGATGACAGAGATTCCTTAATCAAGGAGAGAAATAAATGGAACC AAATCAAATAATTGTTGAGAGACAGGGAAGATGATGATAAATCATATGAAATTGGGTTTT TAGTTTTGATTTGGAATATTGAGATTCCCGTAAAAAATTGGTTTTGATTTTGGAAAGAGA GAGAAATAAAGACGATAGAGAAAAGAGTTGAGAGAGAAAATGAGGAGAAAGCGTTGTGGT TCAGAGGGCAATTTGGGAATTTTGATTTGGTAAAGTGCCTTCTCCTTTCAAAGTGCCTAT TTGTGGCTAAAGTTTCAAAATAGTACCTCTACGTGTAATATTCTCATAAAATTATCTAAA AGTGCCTAAACGTGTCATATTGCCTTTTAATGATTGTGTTTGTCAAACTTGACGAAGCCC AAACCTTTCGGAGCCCACTTGCATACAATCCCTTATTCCCCTTAAATCTCAAACCGAGAG TAAACCAGAACAAACCGAAAATCACAAACTCACAGATCCCAAACCGAGAGTAAACCAGAC TCCGATTTTGGTCATCACTTGATTCGTTATCGTTTCTTCGCCGGAGCTCAGCGTTTATAC TCTGTAATGCCAGATCCGCGGTAACGCANGTCAGTGACCTACTCCGGCGTTTATCACTG |
| GenBank Accession | HG968922 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:2260508 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T1B9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX001686 [GenBank] |
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Last Updated on 10.06.2021 13:37 |
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