SimpleSearch - Line and FST details
Line specific information
| Line ID | 360A10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N434474) |
| Segregation Analysis | 25:22:21 |
| Confirmed for Hit | At3g08010 At5g22500 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 27215, 76828, 76829, 76830, 76831 |
Gene hit At3g08010
| Sequence (A. th genome BLAST matches underlined) | >73-K016878-022-360-A10-8409 ACTTCCTTTTACCTGTGTACACGCGTCATCCCGGTTTCCAAAGGGACATTGCCTCTTCTG TCTCTCGACAATCCCTTTCCAATGAATCTTCCGGAGAACTTGTTTGGGGAGAAACGGGCA TTTGTTCAATTACCTTACTCAGCTGTTAGAGAGGAGATCTCAGATTTTGATGAGAAGTTT GTGTTTGGTGCTATGGGATCCTCCCCTATAGCGAGAAACATATGTAATTCTATTTTGTAA GGATGGTTTCCATGCGATGGTACAACCATGCATTGTTAACGAACGATACCCATTTCGTCT TCAGACCGGTCTGAGATTATGCGAAAATATACACTCATATACATAAATACTGACAGTTTG AGCTACCAATTCAGTGTAGCCCATTACCTTACATAATTCACTCAAATGCTATGGGATCC |
| GenBank Accession | BX001936 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:2556792 - go to primer design |
| BLAST e Value | 4e-87 |
| Hit Clone Code (BAC ID) | F17A17 |
| Hit Gene Code | At3g08010 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA binding protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g22500
| Sequence (A. th genome BLAST matches underlined) | >73-K016880-022-360-A10-8409 TGATCTGANATTTCCCGGACTGAAGCCTTTACATTAGATATATCCTGCCACTGGTCTTTC ATTTACTCATTGCTTTTTCCGCAGCCATTTACTCAAATGTGATGATGCCTAAACCTATAT CATATCTTTTATTTTTATTACAAGACAGATCAATGAGAATCAAGCCACATTTGAATGATT ATTATACAAAGTAAATGTGATATATCATCAATTATTTTCGTAAATACCTTTCATCGAAAT TTGTTGTGGCTGCTATGTTGATTATGATATCAATCTCACTCCACATACGTTGTATGAGAT CAGTGTCTTTCAATCCCAAATTATCGATCGATATATCACCTGGAACCGGCACAATTTTTT CCCGCATCAAGGCATTCAAATTGTCTTCTCCTATGGGATCTCCCTAAATAGTGAGAANNN NNNNNNNNNNNNNTCCCCCTTTTTTTTTTAATTTCAAAAAGCGTAAATGCCCCCCACTTT TAATAAAANNNNCCCNNNNCCCNTNATNATAAAATTNACCAATACACCCATAACCAAAAA ACAAAAAAACAAACCCTCNAAAAAACCANCATTAAAAANANCAACAAAAAAACCAAACAT TAATTAAAAAAAATTTTCACTTCAAATAAAATAAAAACACACCAANTTACAATAAAACAA ACCCACCAAAAAAANTTNNAAAAACAATCTACAATTATTCAAAAAAACAATTATAAAAAA ACCCTACATTCCCTTAAACTCATCATAATAAAAAATAACAAAATAACAAACTAACTCAAC AAAAAAACTTTCNCCCACATCACTCACACAAAACAACCTAACTNTTAAAAAAAAAGGACC NCCCCTAAACCCATGTTAAACTGATTCTGGTCCAAGACAGAAAGAAGCGGCAAGGGCACA ATAGGAACGAGAACGGGGGAAGACGAAAGAAAAAGAAAGACCACAGGGTGTTGTACTAGC AAAGGGCGGGTGTGACAAAAACAAAATAATAAAGAAGA |
| GenBank Accession | BX001937 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:7471913 - go to primer design |
| BLAST e Value | 9e-138 |
| Hit Clone Code (BAC ID) | MQJ16 |
| Hit Gene Code | At5g22500 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | fatty acid reductase 1 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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