SimpleSearch - Line and FST details
Line specific information
| Line ID | 366F03 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N435103) |
| Segregation Analysis | 50:50:47 |
| Confirmed for Hit | At1g77710 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 87517 |
Gene hit At5g19780
| Sequence (A. th genome BLAST matches underlined) | >22-K017040-022-366-F03-8409 TGATCTGAAATTTCCCGGACATGAACCATTTACATTGAATATATCCTGGTTTCACCTTCA TCTTCTTCATCGTCTCCACCTTCGGCACCAACTTCTATCGTAGTCTTTCACCAGGGCGGA CAAGTCTTCACGATGCCTCAGAGAATTCCCTGCCTCCATTCCTTCACCAACGGACCAGAG CACGAATGCCCTCTTCGCATACATGAGATCAAACTTGTGGCCGATCCGAGAGAACACCTC TGCAACTGCTGCGTTGTAACTGATCATGCATACAGCTCTCTGAACCTTAACGAGGTCACC ACCGTGGAACGACTGTTGGAGGATGGTAGTTGATTCCACATTTGAACCCAGATGGGCGCC TGCTAAACAAAACCCACTGCCAAGGGAGTTACTATATAATAACAACATAAAGGTAGAACA CTGAACAGCTATATCCATTACGATGGGGCCCCCCAATAAAGAAAGAGCACGCAACCCTTA AGGACAGAGCTATGGGATCTCCCCAATATAGTGAGACCATAGNAAACTGGTAACCTCCAT TCATTGCATATAGGGGACGCAGATATCTGTCCTTTCCATTTCTGCAAGACCCCAAATGTT GATCGGGTGAGTAATGATCCGTTGAGAAGTCCATGTGGTTCTCCCCCTGCCTGAGCCAAG GGAATCTGATGGGTGGAACCCAGAGACAAGGGGCCACGAAATAAGGAGCTGGGAGACCCC TCCGTTCTTGTTTGCCCATGGACCGAGAATCCTGTCCGGTACACTTTATTGAGCGGTATG GCCGGGGTA |
| GenBank Accession | BX002720 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6688917 - go to primer design |
| BLAST e Value | 3e-146 |
| Hit Clone Code (BAC ID) | T29J13 |
| Hit Gene Code | At5g19780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | tubulin alpha-5 |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At1g77710
| Sequence (A. th genome BLAST matches underlined) | >22-K017045-022-366-F03-8409 TGATCTGTAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGAATATACCTTGTC CTATTCTCCTCACTTCCGTCGCGACATCAATATCGTATTCGACCACGATTCCTTAACCCT TTCATATATTATTATGTTTGTTTTGCACCTGAGCGTTTATCGTTGCTTAGACATCATGCT ATGGTATCCTTCAGACACTCAACTCCATTTCTAGTACCGCACGATTCATCTTATCTGAAA CCGGTGCGTGATAACTATGGTATCTACCGTCATTCAGAGCACCACATTCATTAACAAGGA GCTTGATTTCTACTTGTATGTTGCTAATGACCACACCATAAAACAGACGGCTGACATATT ACCGCGGAACCCGACTGTGAGTAACTAATCTAAAGGTTGCTTTCCTATGGACACTGCACT GCAATCTCTTATAGGCTAGGGACCCANAAAAAAGAAGAGCACGCAACCATTAAGGACAGC ACTATG |
| GenBank Accession | BX002721 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:29208017 - go to primer design |
| BLAST e Value | 2e-73 |
| Hit Clone Code (BAC ID) | T32E8 |
| Hit Gene Code | At1g77710 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ubiquitin-fold modifier |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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