SimpleSearch - Line and FST details
Line specific information
| Line ID | 377E07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436151) |
| Segregation Analysis | 50:50:50 |
| Confirmed for Hit | At2g26380 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 7121, 7165, 9134, 97555, 97556 |
| Note |
Gene hit At4g03270
| Sequence (A. th genome BLAST matches underlined) | >53-K017219-022-377-E07-8409 TCAGACTCTCTACCTCAGGATCACTCTGTAGCTATGAGACCTACGCACTATGGGATCCTC CCTATATTGAGATCCCTTAACTTAAAACTCATGAATCTTTATAATGTGAATGTGTTTTAA AGAGTAGATAAGTGTCTGAACATTGGATTTTTTTCAGGAGGAAGGTGATTTTTTTGATGC TCACATGATAGACAGAATGGAGAATGTGATCCTATGGGATCCTCCCTATAGTGAGAGGAA |
| GenBank Accession | BX004119 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:1433252 - go to primer design |
| BLAST e Value | 3e-32 |
| Hit Clone Code (BAC ID) | F4C21 |
| Hit Gene Code | At4g03270 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Cyclin D6;1 |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 368E07 |
Gene hit T1G11
| Sequence (A. th genome BLAST matches underlined) | >53-K017229-022-377-E07-8409 ATGTATTAATGCTATGGGATCATTCNTATAGTGAGATTCACTCTGTAGCTATGAGACCTA CGCGCTATGGGATCCTCCCTATAGTGAGANNGNGNNNNTAAANNGTNGCGAAANAATTAA TGNGAATGGGATATAAAAAATAGAAGAATGAAAGGATACAAGATTATGGACTAGAGAGAG TGATACTTACCAAAAGA |
| GenBank Accession | BX004120 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:1325030 - go to primer design |
| BLAST e Value | 1e-07 |
| Hit Clone Code (BAC ID) | T1G11 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At4g38810
| Sequence (A. th genome BLAST matches underlined) | >53-K026822-022-377-E07-8409 CATATTTTAATGCTAGTACTAGATGTTTTCGAATTGGCCGGCGTATGGGATCCTCCCTAT AGTGAGGCGGATTACTCCCCCCTATGANCATTTGCCTCGGGGAAAACCATTGATCCTCCT GGGATTCGTAACACTTGGAANACGGGGGGGGGGGGGGCGACAANNANGCCGAACCNTTCC ACNATGCGATGAGTATGGNGGGTAATTACTCCCCTGNAAAGAAGGAAGACGCAGGAAGAG GAAGAGNAAATAGAGAGAAGCGATCAAAGTAAACAGGATTATTGATAGGGGGCGCAGGTA AGAAAAGAAAGAAATA |
| GenBank Accession | FR809113 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr4:18118467 - go to primer design |
| BLAST e Value | 9e-07 |
| Hit Clone Code (BAC ID) | T9A14 |
| Hit Gene Code | At4g38810 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Calcium-binding EF-hand family protein |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
Gene hit At2g26380
| Sequence (A. th genome BLAST matches underlined) | >53-K026788-022-377-E07-8409 TGAAGCCATTACAATTGAATATATCCTGCCAGAACGGGAGGAGTTATTCCTGCAGGTCGT CGGTTTCACCGCCTTGATCGGGCTCGGGAGCTTACCCACCGCTGAGATTCAACCACGTGT CATCCTGATGATGAGGCGGCTCTATTACCTTTTACATCGGGTATAACCAAAGATCCTTCT GGTATTCTAAGCACTTGGAAAAAAGGTATGGGATCCTCCCTATAGTGAGATCCATGANAC CANCCGACGCACCGGGCAGGCGCGCAACACGATCGCAAATTATTTGAACGCGGGTATGAA ATCCTCCCTATAGTAAGTAGGGACGACTCTCGGACTTTAGAGGATTGAAATGAGAGGACA TAGAGACATCTATAATTATGATAGAAAAAGGAGTTATGA |
| GenBank Accession | CR396617 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:11228056 - go to primer design |
| BLAST e Value | 9e-38 |
| Hit Clone Code (BAC ID) | T9J22 |
| Hit Gene Code | At2g26380 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Leucine-rich repeat (LRR) family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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