SimpleSearch - Line and FST details


Line specific information

 
Line ID 378G03
Vector Used pAC161
Line Availability available as T3 set from NASC (N436267)
Segregation Analysis 50:50:40
Confirmed for Hit T1B9
Parent of DUPLO pair 12554
Parent of pair(s) none

Gene hit At3g02160

 
Sequence (A. th genome BLAST matches underlined) 
>23-K017230-022-378-G03-8409
TGATCTGTAGATTTCCCGGACTTAAGCCATTTATAATTGTACGTTGATGGGCTTTCAGGT
TATCAAACAGAATTTCAAACTAATGGGTCTTAGTGGTTGGCCCAACAATAAAAAGACGTT
ACAAAACATATCAAAAGTTCAAAACCAAATCTTGTTTGATACAGTATGTTTTTAATTTTT
AGTGCGACTTAATAAATTCAAATTTCGTCATTTATTGTCCTCCGTAGTTTAGTTTGCTAT
CAATTTTTGTGAGGTTGGAACGTAAAACCAGATAATTCGAATTAATATATATATATATGC
ATGTAGTATGATAGCTATGGGATCCTCCCCTTATAGTGAG
GenBank Accession BX004269 [GenBank]
Graphic View Graphic view of gene At3g02160
Predicted Position of Insertion Chr3:393878 - go to primer design
BLAST e Value 9e-135
Hit Clone Code (BAC ID) F1C9
Hit Gene Code At3g02160 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Bromodomain transcription factor
Insertion Classification Promoter
Confirmation Status unknown
Other FSTs Supporting this Hit BX004268 [GenBank]

Gene hit T1B9

 
Sequence (A. th genome BLAST matches underlined) 
>23-K026789-022-378-G03-8409
TTTACAATTGAATAGACATCGGCCACTTTACTGCGTACTTTCGGTTAGCAGGATACTGGT
AATTAGGTAATCGAACATCACAAGCATTTTTTCTTATTAATGGAAACACTGATTTGTGTA
TGGGATCCTCCCTATAGTGAGACCTATTGCTCACTACTCTTTCGTTTTCTCCATATTGAC
CATCTTACTCATTGCTGATCCATGTAGATTTCCCAGACATTAAACCATTTATTATTGAAT
AAAACCCTCCCCATTATGACTCCTTCTGGTAACCGACAATCTCGTACTTGGGTAAGNGAA
CCTCCCAATCGTTTTTCCTAATTAAAAGATACACTGGTTTGGNGCCGTNGTCATCCCNNA
AAGGATGGAAGGAGAAATGCGGNGTGACGAGAAGGGAANANGAGTNCAGCGGGACGGGGG
GGGGAAGAGAAAGNGATGTTTTTGTGTACCAAAATGAAATCAGANTACACCCGAATGAAA
GAAAAAGGAAGATGAGCAAAGCAATCAAGAAAGCAACGAAGA
GenBank Accession CR396772 [GenBank]
Graphic View Graphic view of sequence CR396772 of line 378G03
Predicted Position of Insertion Chr3:2300959 - go to primer design
BLAST e Value 1e-12
Hit Clone Code (BAC ID) T1B9
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Other FSTs Supporting this Hit CR396774 [GenBank] CR396772 [GenBank]


Last Updated on 10.06.2021 13:37