SimpleSearch - Line and FST details
Line specific information
| Line ID | 379G06 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436366) |
| Segregation Analysis | 60:60:59 |
| Confirmed for Hit | At2g27840 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
Gene hit At2g27840
| Sequence (A. th genome BLAST matches underlined) | >09-K118545-0022-379-G06C-oriL TACATCTCTTAGGTTACCCTTGGTGACGTTGAGAAGGTTAAAAAAGATGAGACTTTTGCC GTTTATGTGAAGATTGGTGATGATGAGAATGGGTTTATGATTGGAAATCTCTCACAGAAG TTTCCTCAATTTTCTATTGATCTCTACTTAGGGCACGAGTTTGAGATTTCTCACAACAGT ACAAGCAGTGTCTATCTTATTGGTTACAGGACCTTTGATGCTTTTGACGAACTATATCCT TTCTTTCATTGTCTTTTTCTAGTTAAATTCATACTCACTTGCAATTTTGAAGCTTTGTTT GTTTATCCTTGATTTTGTTTTGCTCTGCTTTTTTCTGATGCTCACGGATGAGGAGATTGA TTCTGGTGAGTTTATAATTCTTTAGTTGATGATTTGGTTTACTCTATTATGAAGCTTGAA GCTAATCTTTTGCTTTTTGGTTTGTGTAGATTCTGAGTTAGATGAATATATGGAACAACA AATTGGTATGTTTACTTTTTTTACTAAGCTACTGCTTTGTGGTAGTCATATTTACATGTG TATCTCTTATGAAATCTAACTTTGACATTGTTGAAAAGCTGCTTTGCCTCAAAATGAGAT CAATCCTGAAGAAGATGATGA |
| GenBank Accession | HG968940 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:11862694 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F15K20 |
| Hit Gene Code | At2g27840 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | histone deacetylase-related / HD-like protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | CR396841 [GenBank] CR396841 [GenBank] |
Gene hit K21H1
| Sequence (A. th genome BLAST matches underlined) | >47-K017221-022-379-G06-8409 TGATCTGTAATTTCCCGGACATGAAGCCTTTACATTGAATATATCCTGGTGATATTGATT GAATAGTTGGAGATCTCTCACTTTCTTTCTATCTATCATTCTCTACTACTCTCGAGGATA GTCTATCGTACGATATAGAATTCTCTTGGACGTCTTTCTATTTTGCGGAGATACCTTGGA AAAAGAAGAGTGGGTGTTATATAGTGATCTAGCCTGATACTGTGTATTTATTCTGATGGG CTAGGAAATCTTGTCGAAGATACCCTTCTCTGCCCATTCTGTATGCTCACCTGTGAGGAT CTCTCGCTTGATAGTGAGACCTATGGGATCCTCCCTAATAGTGAGACTTCCTATGGGATC CTCCCTACTAGTGAGATCCNTACCCATTCNGGTTACTATGGGATCCTCCCTATAGNGAGA CNCNNNNNAANNCCTGGTGGCATTTCATATGAAACGGACGTTGAAGGGATCACACCACTA |
| GenBank Accession | FR809191 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:26837963 - go to primer design |
| BLAST e Value | 6e-06 |
| Hit Clone Code (BAC ID) | K21H1 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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