SimpleSearch - Line and FST details
Line specific information
| Line ID | 380B01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436397) |
| Segregation Analysis | 100:96:91 |
| Confirmed for Hit | At1g71680 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12568 |
Gene hit At1g71680
| Sequence (A. th genome BLAST matches underlined) | >02-K017232-022-380-B01-8409 TGATCTGAAATTTCCCGGACATGAAGCCAGTTTATCGAATTCATATGGTATTACTGCCTC TTACCGATGTCACGGTCATGGCTGAGACCGGAGTTCGTGGTCTCCCTCCCGCATAGTCAC GGCGTGGGTGGCAATTTTTTAAGAAATGGTTGTTTTAGTCTGATCTTACCTACACTACAA TAAAGGCGTAATTTAACGATTCATTTGGTTCTAACAAGCGACCTGTACTTATTGCTATAA TAATGCCATGGGCTATAACGATCTACTCGTTATGGCAAATGGTACAATTGCACGAAGCCG ATCCACGGAAACGGCTGGACCGTTACCCCGAGCTATGGGATCCTCCCTAATAGTGAGATT ATGATGGGAACATTAAGCATAGTTTTGTGACCAGATTCTGTAGTTATCTATGGGATCCCG CCTAATAGTGAG |
| GenBank Accession | BX004422 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:26945008 - go to primer design |
| BLAST e Value | 2e-52 |
| Hit Clone Code (BAC ID) | F26A9 |
| Hit Gene Code | At1g71680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Transmembrane amino acid transporter family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g25590
| Sequence (A. th genome BLAST matches underlined) | >02-K017222-022-380-B01-8409 TTTCCCGGACTGAAGCCATTTTCTTTTGCACTGTTTTTGATACCAATCCTCAAAACCTTG CTTCTTCCGATAAACTCTCTTCGTGTTTCTTCGCATTTCTCTTTCAGTTTCATCTCCTCT TCCTGGTGCAGCAAGATGGTTTTGATGACTGCCGCGAAAGAGGAGATAGCTGATTTGGCG ACTTCATCGGGAAGTTTCTCAAGACGGTCATGCCATGAGTGGAGAAGAGCTTGGATTGGC GGGCGCTGAGGCCTTGGAGGTGATGAAACTTTCTCTTTAAGACTACTCTCGATGGGGATT AGATTTAGCTTCAGCCAGTTGTTGAGAGAGTTAATGTACTGCTTCTGATGGGGCACAAGT GTATCGAACTGAACATGCCATTCTTCCAAGACGGTGCAGAACTGGCGAGTCTGATGGTGA TGCTGTTTTGTGGTTTCTTTGAGAGAAGTTGAGATTTCAAGGGCCTTTAGCTCTCCAACA ATACCTATGGG |
| GenBank Accession | BX004421 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:8906994 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T14C9 |
| Hit Gene Code | At5g25590 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | DNA ligase (DUF630 and DUF632) |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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