SimpleSearch - Line and FST details
Line specific information
| Line ID | 380E07 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436439) |
| Segregation Analysis | 100:98:78 |
| Confirmed for Hit | At1g30100 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | none |
| Note |
Gene hit At3g23160
| Sequence (A. th genome BLAST matches underlined) | >53-K017232-022-380-E07-8409 TATAGTGAGAGATCCTCCCTATAGTGAGACTCTCNACCTTGTTTTACTCATAAGCAATGA GAGCAGACTGCTATGGGATCCTCCCTATATTGAGACGTGGGTATGAACTTGCTCCGATGC TCATGGAATGACTTGATATGAATAGGACTTTTGTTTGTGATGATGATAATCCTTGTGAAG ATGGAAGGGGGTCTACATTTAAGTTGAATACTGCTATGGATAACTAGCCTATGGGAAGAT CCCTATTGAGAGAATTTAGTGAAAGAAAAAGATGAAGTTGTGAGACAGGGTGTTGAATGA CGACCACCAGCACGAAAAGAGGACCGATGGGTGGGGAATGGAACCAGGAGACGGGGCAAG AAATAGAAGGGGGAGGAAACCACAGACTGCACGAGGGGGGGCTGAGAAACGGAAAGGGGA GAGAGAAGAAGAAAAAAAAAAAAAAGGGAGCAAAGGGAAAAAGGTGAAGGAGTGTGCGAG GGGAAATAAAAGGAAGGGACAACAGGGGGGGGAGACGGACAGAGAGGAAGAGGAGCAAGA CAGGCAGGAGGCGAGAAGGCCAGAGCAGGTGAACGGAGAGGGAAGACCGAGAAGCGGCCA GAGGAGAACCGAAGAGATGAACAGACGACAGAGGAACGAAAAAGGAAAGGGAACAAAAAA AAAAAGGGAAGGGGAAGAAAGGGGAAAGATGAGGAAAAACAACGAAAAAGGAAAAGGAAG GGATAAGGGCACGGGGCAAAAACAGAAAGGAGAAACAAGCGAGTGAAAAAGAAGGAGGGG AAAAGGGGAGGAACACAAACAATAGCAAGGAGGGGGGGAAAGGTGGCGGAAAAACCAAAA CCGTGAAAAGCG |
| GenBank Accession | FR809213 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:8260863 - go to primer design |
| BLAST e Value | 4e-04 |
| Hit Clone Code (BAC ID) | K14B15 |
| Hit Gene Code | At3g23160 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | plant/protein (DUF668) |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 380D11 |
Gene hit At1g30100
| Sequence (A. th genome BLAST matches underlined) | >53-K017222-022-380-E07-8409 GATCATGAGATTTCCCGGACATGAGCCATTTAACATTGAATATGGCACTATATTTGCGAT ATGGGATCCTCCCTACAGTATGAGGAACCCGAGATATTGGGACAAGAGAAACTACTCGGT TCTCCGATTTTCCCTAAAGCTATAGGTGAGCTACATGGTCACTCTGGAATCGCACGGTTG ATGCTATTTTACGCACGTGGTTTATTCGGTTTATTAAATCACAAAAACGGAACCGGAGTT GCTAACGCCGGTTTGGTTTACTTCCACGACCGGTTATTAGCTATGTCTGAAGATGATCTA CCTTACCAAGTTCGTGTCACTGACAATGGCGATTTAGAGACCATCGGAAGATTCGATTTC GACGGACAACTAAGCTCCGCCATGATCGCTCACCCGAAGATTGATCCGGTAACGAAGGAG CTATTTGCGTTGAGCTACGACGTCGTTAAGAAACCGTATTTGAAATACTTTAAATTCTCG CCGGAAGGTGAGAAATCACCGGACGTTGAGATTCCTCTCGCCAGTCCGACGATGATGCAC GATTTCGCGATCACTGAGAATTTCGTTGTGATTCCGGATCAACAAGTTGTGTTTAAGCTC TCCGATATGTTTCTTGGGAAATCTCCGGTTAAATACGACGGAGAGAAAATTTCCCGGTTT GGAATTTTGCCTAT |
| GenBank Accession | BX004482 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:10571909 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T2H7 |
| Hit Gene Code | At1g30100 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nine-cis-epoxycarotenoid dioxygenase 5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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