SimpleSearch - Line and FST details
Line specific information
| Line ID | 382A12 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N436588) |
| Segregation Analysis | 50:44:33 |
| Confirmed for Hit | At1g24793 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 36017, 81198, 81199, 81200 |
| Note |
Gene hit F5A9
| Sequence (A. th genome BLAST matches underlined) | >89-K017269-022-382-A12-8409 TATCATGAAATTTCCCGGACTGAAGCCATTTACATTGAATACATCCTGACATGATCATAT ATGCTCATGACGTTCGCCCACGAGACATAGAGACATTTACAATTGAATATATCTAAAATT CCCTTATACTAGATTGTTCTAACTAGATCAACATTATTGCTTACCGACTGAAACAGGGCT ATGGGATCCTCNCTATAGTGAGAAAACGAACATCTCTGCACTCCGGTAAGCTCTCAACGG TGAAGCTAAATCCGGACATCGCCGGACCTGGTAGGCTCTGCGAGTTTCCATCCAGATTCA TCCCTGCGTCGATTGAATTTGCTCAGGAATCGCCTCTTTGCACGACGCTGTTGAAAGATG AGCTCAAAATCCGAACCGTTGAGCATTTGTTATCAGCTCTTGAGGCGAACGGAGTTGATA ATTGCAGGATTCAAATCGAGAGCGAAGTTCTGATGATCGAGAAGTCGAGGTTTGTTACCT GAATACATACATTTTGAGTAATCATAGGTCGAATCAATGTCTCGTATTGTCTATTTTGAC TGGATTTGTATGCTATAGAGATTGTCAACATCTTGCTGTGCAGTGTAGCTCCTAGTTTTA TAGACTTGGTACACTGGAGGAGATGATGAGTGTANGCAACACTAACCAAGTGACAGGTCC CTATTTTTGATGGATCAGCTAAAGAATGGGCCGATGCGATACAAGAAGTGGCATAAACCC GGCTCAAACCATGATGGGGAAGTGTAAAGAGATGGTCGCACTGTGAACAGCCTGTGTATG TTTGCAAGACCATAACTTTTGTGCTGCATTTCCGCTCTA |
| GenBank Accession | BX285337 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:8782061 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F5A9 |
| Insertion Classification | Genome Hit |
| Confirmation Status | failed |
Gene hit At1g24793
| Sequence (A. th genome BLAST matches underlined) | >89-K017265-022-382-A12-8409 GATCTGTAGATTTCCCGGACTGAAGCCATTTACATTGAATACATCCCGGACGGCTTAGTG GCTTTGACGGTCGACCGGGAGTCTCATTGATTCAACGTCTGATTAATTTTAACCATGCCC GGATTATTGATTTAAGTAAGTACTATGGGATCCTCCCTATAGGGAGAGGTACGGCACAAT CGTCGATGATCGGTGATATGCGACTGGAACCTATCCTCTCTCCAGACAGTGCTCCTCGGT GAACCTATTTCCGGTGTACGCCGTCAGCTGGTACGTTCTATTAGATTAGATACATATACA TCCCTGCCTCTAGTGACTTACCTCGAGAATCACCTCTTTGCGCGACACTGTTGAAAGATG AGCTACTAATCCCAACCGTTGAGCATTTGTTATCAGCTCTTGAGGCAAAGGGACCTTATT TTGCAGGATTCGATCGAGAGCGAAACTCCGATCATCGAGATTCCCCGTTGTTACCTGAAT CCTACATTTTGAGTAATCATAGGTCGAATAATGTCTCGTATTGACTATTTTGACTGGATT TGTATGCTATACAGATTGCCAACATCTTGCTGTGCAGGGTAACTCTTAATTTTATAGACT TGGTACCCTGGAGGAGATGATGAATGTACGCAACACTAACCAAGGGACCGGTCCCCTATT TTTTAATGGACCACCTAAAGAATGGGGTCAATGCCATACCAAGGATTTGGCATAAACGCG GCTCAAAACCATGATGGTG |
| GenBank Accession | BX285336 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr1:8767681 - go to primer design |
| BLAST e Value | 3e-100 |
| Hit Clone Code (BAC ID) | F5A9 |
| Hit Gene Code | At1g24793 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | UDP-3-O-acyl N-acetylglycosamine deacetylase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
|
Last Updated on 10.06.2021 13:37 |
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