SimpleSearch - Line and FST details


Line specific information

 
Line ID 387B10
Vector Used pAC161
Line Availability available as T3 set from NASC (N437078)
Segregation Analysis 100:100:88
Confirmed for Hit At1g29280
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At1g10640

 
Sequence (A. th genome BLAST matches underlined) 
>80-K020163-022-387-B10t-8409
TCTTTATAAAATTATCCCTTTTACTGATCCTACTCCTCCTTGCCACTGTCTTGATTCTAA
CTCCTGTTATTGTGTTGTGCATAGCTACTTTTCTGACTGTTATGTTCAATACGCATGCTT
TTGTACCCTCTTTGTCCATACTACCAATGCTGATCCCATGACACGTTCCATGGTTCTCAT
TGTGCACAAATTCGTTCAATCAACCCCTTTGGATCGACATATTTCCTTCTCCTGCATAAT
TCTCGGCTTCTATGTGATCCTCCTCTATATAGAGAG
GenBank Accession BX530894 [GenBank]
Graphic View Graphic view of gene At1g10640
Predicted Position of Insertion Chr1:3515738 - go to primer design
BLAST e Value 5e-47
Hit Clone Code (BAC ID) F20B24
Hit Gene Code At1g10640 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Pectin lyase-like superfamily protein
Insertion Classification CDSi
Confirmation Status unknown
Other FSTs Supporting this Hit BX530893 [GenBank]

Gene hit At1g29280

 
Sequence (A. th genome BLAST matches underlined) 
>74-K018254-022-387-B10-8409
AGATTTCCGAATTAGAATAGTTTGTCTATTGCTTTCGCCTATGAGTACGACGGATCGGAT
TTTGCCACTTTATCCAAATGTACTTCTCTTTGTATATTAACGCTGCTGACCTCTACCTTC
TTGAATTAGAAACAGATCGGAAACTACTCTCTCGCTTTCTCCCAATCGTGAGTCAGACGC
AGAGCCGAACGATGAGGAGGAGGAGAATAAGATCATGGTTCTTGGAAGGGGGATTGAAAC
CACGCCATCCTGTGGCGACGAGTTCGCATGGATGACGGAGATGGAGACAACATCTTCGAC
GATTCTTGAGAGCCCGATTTTCTCGTCGGAGAAAAAGACGGCTGTCTCGGAGGCTGATGA
CGGGTCGGTGCCTCTTTCCGATGGGAGAAGAGGATGAGTCTTTGTTCGCCGATCTCGGCG
AGTTGCCGGAGTGTTCTGTGGAGTTTCGTCACCTCACTAGCGTAGACGGGTCTCTACTTC
ATATCTTTTGAACCGTGGAGATATTGTATGGGATATTATTCGCGCTCAACTGAGAAGCGT
TGTACGCACGCCGTTTGTGTTTTAGTGTCTCAACGG
GenBank Accession CT026342 [GenBank]
Graphic View Graphic view of gene At1g29280
Predicted Position of Insertion Chr1:10236979 - go to primer design
BLAST e Value 1e-127
Hit Clone Code (BAC ID) F28N24
Hit Gene Code At1g29280 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation WRKY DNA-binding protein 65
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37