SimpleSearch - Line and FST details
Line specific information
| Line ID | 387E04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N437108) |
| Segregation Analysis | 50:49:26 |
| Confirmed for Hit | At2g29980 |
| Parent of DUPLO pair | 12446 |
| Parent of pair(s) | none |
| Note |
Gene hit At2g29980
| Sequence (A. th genome BLAST matches underlined) | >29-K018254-022-387-E04-8409 TGATCTGANATTTCCCGGACATGAAGCCTTTACATTGAATATGATCCATTTACCAGTGGA TCGGTATTGCTCCTGACGTCTTTGGGTCTCCACCAACACATGTTTAGCTGCTTTCGTCTG TCATTAGATCAATTAAACAGTCCCGAATTATTAATCACCTTTTCTATGGGATCCTCCCTG TCGTGAGAAGGGTTCCCCTCGGGAGTGCTTGGCATTCCGTGCGATAATGACTTCTGTTCA ACCACCCGTACGTCGGACAGCCTGACGACGGAGCAGCATTCCCAAAAGATCCCTTGGCTC GTCTGGGTCGGCTATGGGATCCTCCCTTATCGTGAGTACGGATACCTTTATCTCGATGAG GCCACTTGCACGACCCAATGGGGGCTTCCACTAGAAACTCCACGATCGACGGCCAGATGT CGCATGGAATCCGAGGAGGTTTCCGGATATTACCCTTTGTTGAAAAGTCTCAGTTGCCCT TTGGTCTTCTGAGACTGTATCTTGGATATTTTTGGAGTAGACAAGCGTGTCGTGCTCCAC CATGATGACGAAGATTTTCTTCTTGGCATTGGGTCGGAAGAGACTCTGTATGAACGGTTC GCCAGTCTTTACGGCGAGTGCTGTTAGGTCCTCTATTTGAATCGTGGGACTCCTGGGAAT TGGGGA |
| GenBank Accession | BX286003 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:12781912 - go to primer design |
| BLAST e Value | 5e-25 |
| Hit Clone Code (BAC ID) | F23F1 |
| Hit Gene Code | At2g29980 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | fatty acid desaturase 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g20650
| Sequence (A. th genome BLAST matches underlined) | >29-K018250-022-387-E04-8409 TGAGCTGATATTTCCCGGAATGAAGCCATTTACATTGAATATGATCCATTTACAAGTGGA TCGGTATTGCTCCTGACGTCTTTGGTTCTCCACCAACACATGTTTAGCTGCTTTCGTCTG TCATTAATCAATTAAACAATCCCTAATTATTAATCACCTTTCCTATGGGATCCTCCCTAT AGGGAGATAAATACATCACGGAAATGAGCTTCAAGGTTATGATATTGAAGCAGAAAGAAA ATCAACAATACAATGCCACGAAACCTCTATATGTTCCTGTTATATTCCACGCAGAAAACG GTCCTGCTCCACCTTTTTCTTTTTTGCCAAAGAGCCACTGCAAGATCACAAAACAGTCTC AGCCTTCCCATTCTATCGAAAACTCGGCGGCAAATAGAGAGACGAAAACTGCATAATCTA ATTCCCATCCTAGGAATTCGCAAGACACCATAGGCAACATGGGAATCCTTGATCTACTTG TTTCTCAGATTCCCTTTGAGGTTAGGAGAGTGAGTCGATTCGACGAGGCTAGCTTGTAGG TTAGCCTTTAGTTTCCGGCAAAGAATTGGATTTTCATACTTCCTTCCCCTTTGAGCGATT CAAGTGGACTTTATCCTATGGGATCCT |
| GenBank Accession | BX286002 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:8906369 - go to primer design |
| BLAST e Value | 9e-116 |
| Hit Clone Code (BAC ID) | F23N11 |
| Hit Gene Code | At2g20650 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RING/U-box superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
