SimpleSearch - Line and FST details
Line specific information
| Line ID | 395G09 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N437905) |
| Segregation Analysis | 50:43:28 |
| Confirmed for Hit | At1g12950 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4404, 4543, 4555, 10034, 86204, 86271, 86272, 86279, 86282 |
| Note |
Gene hit At1g12950
| Sequence (A. th genome BLAST matches underlined) | >71-K018294-022-395-G09-8409 GATCATGAAATTTCCCGGACATGAAGCCATTTAAATTTTTAAAACGAAAGGGGGATGTGC TGACGCCCATAACCAATATGGTGGATATGATCAGATCTTCGGTTTGAAGACAATTTAACA AACCCCCACAAATTGTGAAAAGCCTCCCACGTAAATCCAGACCAAGCCTCTCCACACGTA CAATTAAAGATATACACAAGTTGTGCAACAACGATGACCCACCACGACGTGTTAAGCACT AAAGCTAAACCAGGAAGTCCCCAGTGTAACCTATGGGATCCTCCNTTATAGTGAGGAGNN NNNNNNNNNNNNNNNNANNNATTTTNNTGTATATTAAAAAGGGATCTTCCCTATACTGTG TTTTAAAATGACACCACTTGTGGAAAAACCCCCAAATTAGTATACACCAGGGCTCTCGGC AAAACAATTAAAAAATATATCCAA |
| GenBank Accession | BX286962 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:4421092 - go to primer design |
| BLAST e Value | 2e-89 |
| Hit Clone Code (BAC ID) | F13K23 |
| Hit Gene Code | At1g12950 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | root hair specific 2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g20850
| Sequence (A. th genome BLAST matches underlined) | >71-K018298-022-395-G09-8409 TGATCTGTTATTTCCCGGACATGAAGCCTTTACATTCGAATGCGGACTGGGGCAATTGCA TACCCGTTATCACCTATGTGGTATATGACTCGAGCGCCATGGGATCCTCCACTTATAGTG AGCCACTCTAGTAGTGAGAAGATTCCCCATTTTACGGCACTCAGACTCTCCGCTCGGACT ATGAAAAATGTTGACAACTCGCGAACTGCACTTCTACCCATGGCAACATGTGTTATATCT CTGCTACTACTTGACAGTCCCCACTGCATACCAAGGACTACATGATTTGTTATTCGATTC ATTTATCTATTATCTGAGAGATTCTCTGAATATAGGCTATGGGAACCTCCNTAGAGTGAG CATGAGTGTCACAAGAATAACATACCTGTTAGCTATCTGTAAGAGTCTTTGCGGCCTGAA TGTTCCCTCAACATCAATGTACATGGGCTTTCCCTCTCCACCTCGCTGAACCATGGGAAG CTTATCATTCAAACGTGAACCTTAATGTGAATATCTTTCTCGGGGTTGGAAATTGTAAGA AGAAAGACCAGATCGCTGATTTCTGCTATGGGAT |
| GenBank Accession | BX286963 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:7071276 - go to primer design |
| BLAST e Value | 2e-80 |
| Hit Clone Code (BAC ID) | F22D1 |
| Hit Gene Code | At5g20850 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RAS associated with diabetes protein 51 |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
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