SimpleSearch - Line and FST details
Line specific information
| Line ID | 396D01 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 1723, 11137 |
| Note | |
Gene hit At4g34990
| Sequence (A. th genome BLAST matches underlined) | >04-K018295-022-396-D01-8409 TGATCTGTAGATTTCCGGACATGAAGCATTTACAATTGATATATCCTGATATTGAAACTA TGATTCATATTGAAACTATTTTTCAAAATATGTTCCAGATTTTGGCTACCTATGGGATCT TTCTTATAGTGAGAANNNNNNNNNNNNNNANNNCCCNNCTNNCNTCTNCNTCCNGGACGC GAAAGACCACCGGGGAATAATCAAACGAATTCTCCTTATGGAAAAACAAACTACTATGAT GCCGCCTTTTTTATGTGGCCGCAGCTGAAACCAATTAATTCTGATTAGGACATCTTGTTG TGAACATGACCCCTTTCGGGGCCATATGGGGGATAAGATGAAAAAGTTCGGGTACCACCG CTAAATTCCACCGGGAGAGGAGATAAATATATGGAAAACATGGAAATGGTGGTACCCGTT CGAAGAATTGGCCTATGGGATCCTCCGTATTGTGAGCATGTTAATCGAACATGAAATCGT GTCTTTGTTTGTTTGTATCAAAACTAGAAACTGCGACGTTGGCACGATCGAGGTCGCAGA TTCGGTGAGAAAACGCTATA |
| GenBank Accession | BX287020 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:16662064 - go to primer design |
| BLAST e Value | 4e-16 |
| Hit Clone Code (BAC ID) | F11I11 |
| Hit Gene Code | At4g34990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | myb domain protein 32 |
| Insertion Classification | CDSi |
| Confirmation Status | failed |
Gene hit T1E2
| Sequence (A. th genome BLAST matches underlined) | >04-K017796-022-396-D01-8409 TATCATGAGATTTCCNGGACATGAGCATTTACAATTGATATATCCTGATATTGAAACTAT GATCCATATTGAAACTATTTTACAAAATATGTTCCAGATTTTGGCTACCTATGGGATCGT CCCTATAGTGAGAGNNACCNAGCCNGAGCTTTTTCGTGCCTACCGATGGGAGGCTCCCTC TAGGGAGAGAGTGTGGTTTCATTATCAACTATAAAGGGAAGGCACCACAGTCTCACACGT TAACCTGTGAACCAAGAAGCCTATACGTGGACTAGTCTACGCCATCGATGCGTCGATGGG GTCCTCCCCTAGAGGAGCACACCAACACCGAGATTGATCCCTATAGCAATGTCTCTAGAG CGCGACCATGGGGAAGTCCTCATAGTATGTAGAGCACTTGATAATAAAGGTATTCATCCT ATGGGATGCCTACGAGATCCAGACTATNAGGAGACCCCCGAAGGGCCTTCACCCGTGAAA GAGCCACTTTAGAGCCCTCCGAGAGTCCTATGGATCCTTACCGATGCAAGACTGGACCTG GCCTCGAAACGGACCCCCGCTCAGAGGGATGCTCCCCACCCTCACCCAAGAGAACGACCC TTTTTGACAAAACTCCCATAGAACACAAGGGCTGGTCTCGGGGCGGGGGCGGCCCACAAC AAGGGGACCCCCCCGGAAAGAAAGAGGGGAACACCCCCACCCCACCAAGAGGAATAAAAC CCA |
| GenBank Accession | BX287019 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr2:11910226 - go to primer design |
| BLAST e Value | 2e-11 |
| Hit Clone Code (BAC ID) | T1E2 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit T30B22
| Sequence (A. th genome BLAST matches underlined) | >04-K018299-022-396-D01-8409 TATCCTGAGATTTCCCGGACTGAAGCCATTTACATTGAATATATCCTGATATTGAAACTA TGATCCATATTGAAACTATTTTTCAAAATATGTTCCAGATTTTGGCTATCTATGGGATCC TCCCTATAGTGAGAAGACGTCGTTTTGGAATAAGCATGATATCTATCTTACTGTAACCTT GACGCACGATATATGATTGCGTTTTTGAGAAACCCATATCCATTATGATCATTGCCAATT ATTCAACTCTATTTTTTTTCCTCCATGACAATTTTATTAATTTGGCTATGGGATCCTCCC TATAGTGAGCATTCACGTCCAAATGGGGGCTTATATGAGAAACTTCACGATCGATGCCTT GATTTCGCCTTTCGAAGANNNNCANTNN |
| GenBank Accession | BX287021 [GenBank] |
| Graphic View |
|
| Predicted Position of Insertion | Chr2:19469255 - go to primer design |
| BLAST e Value | 4e-56 |
| Hit Clone Code (BAC ID) | T30B22 |
| Insertion Classification | Genome Hit |
| Confirmation Status | failed |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
