SimpleSearch - Line and FST details


Line specific information

 
Line ID 399G07
Vector Used pAC161
Line Availability available as T3 set from NASC (N438287)
Segregation Analysis 50:37:33
Confirmed for Hit At1g32850
Parent of DUPLO pair none
Parent of pair(s) 922, 97290, 97291
Note

Gene hit At1g32850

 
Sequence (A. th genome BLAST matches underlined) 
>55-K017893-022-399-G07-8409
TATCATGAGATTTCCCGGACTGAAGCCATTTACAATTGACAATCCGAAGTCTTGATCTCG
GATTCATTTACAGCTGAAACACGGCTGTCATCAAAATTATACCATTTGGTCTCATCCATC
AACTGCAGAAGCAAACAGCCACTACACGTTAGTTTCGATGTATTTGCCACTATGGGATCC
TCCCTATAGTGAGACAAANATTTCGAGTAACTCTTCATACTACCGCGGGTTTTTTAAAGG
TTCAGACGGGATCCTCCTTATAATGAGACGGAAATTTTTATTTCGACGCGAATACATTCC
CGTCCAAATGGGGGCGTATATGAGAAACTTCTCTATCCAGACCTTGAATTCGGCATTCCC
A
GenBank Accession BX287357 [GenBank]
Graphic View Graphic view of gene At1g32850
Predicted Position of Insertion Chr1:11906832 - go to primer design
BLAST e Value 8e-67
Hit Clone Code (BAC ID) F9L11
Hit Gene Code At1g32850 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ubiquitin-specific protease 11
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g38430

 
Sequence (A. th genome BLAST matches underlined) 
>55-K017932-022-399-G07-8409
ATTTCCCGGACTGAAGCCTTTACATTGAATTGATATACTCATTGTATATTCGGCGGCCTC
AAATCCATGACTGGATTCCCAGTTAAGAAGGTCAACACTGACATTACTTCCATTACAAGC
AATGGTGGAAGAGTAAAGTGCATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGAC
TCCTTCTTCGATGAGAGCCGGCGGCTATGGGATCCTCCNCTATAGTGAGTACTGTACATT
GCCAGAGACTCTCATCGATCATTGCATGTTACTTTATCTTCTATGGAGATCCTCTCTTAT
ATTCGAGTATGGAGATCCTCCCCTATAGTAGCGATCTATGTGGAACCCTCCCGAATGTAA
AGCGTCCGCCCCATGACATATATTATCGCGAATCCGGAAATTCTTAATTTGGGAAGTGGC
TATCTCTCACGATTCGGGTGGGGGACTTAAATAGAGAAACTTA
GenBank Accession FR809587 [GenBank]
Graphic View Graphic view of gene At5g38430
Predicted Position of Insertion Chr5:15385082 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MXI10
Hit Gene Code At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribulose bisphosphate carboxylase (small chain) family protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37