SimpleSearch - Line and FST details


Line specific information

 
Line ID 401G11
Vector Used pAC161
Line Availability available as T3 set from NASC (N438483)
Segregation Analysis 50:50:39
Confirmed for Hit At2g20960
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At2g20960

 
Sequence (A. th genome BLAST matches underlined) 
>87-K018291-022-401-G11-8409
TGATCATGTAAATTTCCCGGACATGAAGCCATTTAAATTGAATATATCCTGATCACCGAT
ATGCCACCTATGATAATAGGCCGAGGACACCCATACATGAGTCTGCTGCAACAGAAAGGA
GGCCCCAAACACCAGAAACTAGGCCGAGGACTCCTGAACACCGATCTGCCATCCCTGACA
CTATGGCAACGACACCAATGCGTGAGTCTGCTGCAACAGGAAGGAGGCCTCAAACACCAA
AAACTAGGCCGAGGACTGCACAACGTATAGGGAGGTCACCTGAGTTCATGGAAAGATCCC
CCGGACCAAGGTCCAAGACCCCAGAGCCTCAACCTACTTACTTCGAACCATCCTCAAGGA
CTCCNAAACAGCGGTCCAAGACGCCTGAACCCAGCCCTATGGGATCCTCCCTATNGTGAG
AGTNNCANAGATGCCTTGACGACGCTTCTCTTAAAATGCCTCGGACAGTTGAAACTACGC
CTA
GenBank Accession BX287480 [GenBank]
Graphic View Graphic view of gene At2g20960
Predicted Position of Insertion Chr2:9007940 - go to primer design
BLAST e Value 8e-178
Hit Clone Code (BAC ID) F5H14
Hit Gene Code At2g20960 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation phospholipase-like protein (PEARLI 4) family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g38430

 
Sequence (A. th genome BLAST matches underlined) 
>87-K018290-022-401-G11-8409
TGATCCTGAAATTTCCCGGACATGAAGCCTTTACATTGAATATATTCTCTTCAGCTGTGA
CTACAGTCAGCCGTGCTTCTACGGTGCAATCGGCCGCGGTGGCTCCATTCGGCGGCCTCA
AATCCATGACTGGATTCCCAGTTAAGAAGGTCAACACTGACATTACTTCCATTACAAGCA
ATGGTGGAAGAGTAAAGTGCATGGTGACGGTGTTCGGCATTCTGAATCTCACCGAGGACT
CCTTCTTCGATGAGAGCCGGCGGCTATGGGATCCTCCCTTATAGTGAG
GenBank Accession FR809626 [GenBank]
Graphic View Graphic view of gene At5g38430
Predicted Position of Insertion Chr5:15385032 - go to primer design
BLAST e Value 6e-06
Hit Clone Code (BAC ID) MXI10
Hit Gene Code At5g38430 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribulose bisphosphate carboxylase (small chain) family protein
Insertion Classification CDSi
Confirmation Status failed


Last Updated on 10.06.2021 13:37