SimpleSearch - Line and FST details
Line specific information
| Line ID | 406D08 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N438924) |
| Segregation Analysis | 50:46:37 |
| Confirmed for Hit | At2g06510 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 12332 |
Gene hit At4g14720
| Sequence (A. th genome BLAST matches underlined) | >60-K017952-022-406-D08-8409 TATCTGAGATTTCCCGGACTGAAGCCATTTACTGTGAATATATTGGCAACTCCTGGACCT CCTCGGCCTTATAACACTTCTAGCTAAAAGAAAACGTTTCCATCTCCTTTAGTTGTGAAT ATATCAGCTGATATCTCATTATCACACAAAACCTAGGTTATCCTCTTTTCAGATAGCTTT GCAACGATACTTTTCTGTTCGCCTGACCCTCAACATCTTCAGAAAAGACCAACAAAAAGA ACAATAGTTAAATTAACAGAATTTCATGGTCGTATATCATGCAGAACAAGCAAGTAGTTT AGCGTAGCATGTAGAGGTGAAGAGGTGGACCAAATTTCGCTCTCAGGTGTTTTAAAGCAT CATTGAATAATAGGATTTCATATCTTTAAGGTAAAATGAGTACTGTTTGTACCAGAATCA CGAGAAGCAGGTGCCTTTTCAAGTCCATATTGGGGAAGCTCCACCATCTTCTCTGAAAAA ATCAAATCACAATTTCAAAAAAAGGGGCACGAGGCATCTGTAGACACATAAGCTATGGGA TC |
| GenBank Accession | BX287934 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:8432697 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g14720 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | TIFY domain/Divergent CCT motif family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At2g06510
| Sequence (A. th genome BLAST matches underlined) | >60-K017977-022-406-D08-8409 TGATCTGAGATTTCCCGGACATGAAGCCATTTACATTGAATATATTGGCAATTCGGGTTA CCTCCCCTCCATCATAGTCAAGCAGATCAAACGAGAAAACCTTTCCATCTCCTTTTGCAT TGTTATATCGTCTGATATCTCCTTTCGCAGTTACCCTATGGGATCCTCCCTATAGTGAGA TNAAANANAAAAGGNNNTTCCCCATTTGTATCTCACTAATGAAGACGAAGCGACGTGAGA TTTCACATGGGGGATGCAGATTTTGATGGAACGATCAATGGCAATGAGTGCGAATTTGAG GGGAAAGCGACTAGAGCACTTATGCCTAGATGGGAAGAACTGGATGGCCGACGGGGACCA ATTGACGAGATGAATGGGGGGCCTAGATAAGAAAATTCACGATCGGAGGGATTGATGTCC GAGTAACAAAGGGTGGGAGACGGAGCGACGAAGGTAGAAGAGACGAAGGAAAGCGGCGGG GCCACAAATAGATTCACGGCAACAACAGGAAGCGTAAATAGAAGGAGAACGCGAGAGACA AGAGATACATTCCGCGGAAAAAATGTTATCCAGCAAGCGGGACCGGACGAAAAATAAGCC CGGAAATTAATATGGTGGGCGCCCATCCCACCGGCACGTTTAATATATTCGACGTTGAGA ACACAAATGAAAAACTAAAAAACTAGACGGCCCACGACCGGCGCCGACCACCACACAAGA AGGAAGAATAGAGAAATGCACCGGGGGCGCCGGGGTGAAGGCGAAAGAGAAATAGCAGGC AGTACTGTTCATAGAGAGACGAAACCTGCGCTCTCCTCAACCGCGCCGCCTCCACACACA TTAATATATAAATAATCGTAGA |
| GenBank Accession | BX287935 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:2586419 - go to primer design |
| BLAST e Value | 3e-45 |
| Hit Clone Code (BAC ID) | T12H3 |
| Hit Gene Code | At2g06510 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | replication protein A 1A |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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