SimpleSearch - Line and FST details


Line specific information

 
Line ID 406G09
Vector Used pAC161
Line Availability available as T3 set from NASC (N438961)
Segregation Analysis 50:39:37
Confirmed for Hit At2g46680
Parent of DUPLO pair none
Parent of pair(s) 31614, 79012

Gene hit At2g38255

 
Sequence (A. th genome BLAST matches underlined) 
>71-K017977-022-406-G09-8409
TGATCTGAAATTTCCCGGAATGAAGCCTTTACATTGAATATATCCATGTAGATTTATTTT
TTATAATATGGCTTTTATTGAAATTGAAATTTTCCTGTAACAACACAAAATAAAAGGATT
AAAGAATATAATAGAATTACAATATTATGCTCATATAATTGGATGTATTATTACACATCT
TATTATATCTAAGTAACCACTATAACGACTATACCTGAATCTTGTGGTTTTTCAACAATG
GATGTTGGAAAGCGGGTTGTTTGTATATATCATACACAATCAAATTCCTGTAAAATTGAC
TACAATACATATATTTATTTGAGAAATTTATATGATCAAATCTTAAGGAATGCAAAAATT
ACAAAGTAAGAGTTATAGAAGCTCACATCAACGTTTCCTTCAACCATTTGCGTAACAAGC
AAATAAGAAGATATAACAAACACTATGGGATCCTCCCTAAATAGTGAGAGAAGAACAAGG
TTTTTTTTTTTTTTTTTTTTTCCCCCCCCCAAAAAAGATCTCCACGGGGGGTTTTTTGGG
AAAAAAAGTGGGATCCCCCCCAATGGGGGGAAAAAACCCCGGTAAATTCTCCGCGAAGGC
GACACCAAAAAAATAAAAATTCGGAAAGCTGTATTCCAAAATTTCTTCCTTCCTGGCCCA
AGGGGGGGGTTAGACAAAAAGGATCAATCACCGGGGGCGCGGCTCCCCCTTTAGGAAAAG
AACGGAGAACTGTGTTTTCTCAC
GenBank Accession BX287970 [GenBank]
Graphic View Graphic view of gene At2g38255
Predicted Position of Insertion Chr2:16024472 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F16M14
Hit Gene Code At2g38255 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein (DUF239)
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At2g46680

 
Sequence (A. th genome BLAST matches underlined) 
>71-K017952-022-406-G09-8409
CCTCTGAGGAGTTATTCCGATGAGTATGACCGACTGTGGAGAATATTCTCCGGCGATGAT
GACATCAGATGCGTTCTGGACCATGAACACGATGACGAAGACCCACCTCGACGAGAACTG
CGATAGATGTCTAGCGGACCAGCGTATGCTGTCACTGGATGATCGATCGTGTTGAGTCTG
ACACTGGGATCGCCCCATATGAAGAAGGTTCAATTAGCTATGGGATCTCCNTAATAGTGG
AG
GenBank Accession FR809706 [GenBank]
Graphic View Graphic view of gene At2g46680
Predicted Position of Insertion Chr2:19166843 - go to primer design
BLAST e Value 2e-09
Hit Clone Code (BAC ID) T3A4
Hit Gene Code At2g46680 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation homeobox 7
Insertion Classification TS2TE (5')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37