SimpleSearch - Line and FST details


Line specific information

 
Line ID 410A07
Vector Used pAC161
Line Availability available as T3 set from NASC (N439271)
Segregation Analysis 50:48:45
Confirmed for Hit At3g09630
Parent of DUPLO pair 1774
Parent of pair(s) none

Gene hit At3g09630

 
Sequence (A. th genome BLAST matches underlined) 
>49-K017999-022-410-A07-8409
GAACACTTTATCTAGATGTACAATCTGACTGTCTGCCGTCCATTCGGCTATCTCTCTCGT
ACTATGGGATCAGCCATATCGTGTGATAAACTTATCCCACAATGAACAAGATATGCGCTA
ACAGAAGTACCTGGTCTATGGGATCCCTCCCTATTCTGTAGTACAAGACAAAGAATCGTA
CACAACAGATTTACAAGACAAACTACTATGGGATCCTCCCTATAGGGAGACGATGCGATC
TCCCGTCAATATGTTAGGGACCACAGACTGTAACCCTAATTGGGGCGGATACCTATGGAA
TCCTCTCTATACTGAGAAAATGGGGGCTTAAATGAGAAACTTCCCAATCGAGGCCGGGAT
TTCGC
GenBank Accession BX288190 [GenBank]
Graphic View Graphic view of gene At3g09630
Predicted Position of Insertion Chr3:2955352 - go to primer design
BLAST e Value 1e-16
Hit Clone Code (BAC ID) F11F8
Hit Gene Code At3g09630 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal protein L4/L1 family
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit K1F13

 
Sequence (A. th genome BLAST matches underlined) 
>49-K017995-022-410-A07-8409
TGATCTGAGATTTCCCGGACTGAAGCCATTTACATTGAAAATGAAAACTTTATTGATTAC
AATCTGACTTTCTGCCTCCAATTGGTTAATCCTCTCTACTAGCAATTCATCTTTCTCATT
CTTTAGCTTCTCTAACTCCTCAACTGCAGATAACCGTTGCTTGTTTAAGATAAGGATATC
TAACATACACAACAATACATTCGGGTGAGTTAACTTTCACATATCAAACCGAAACCAACC
TCAACCAAATTTCTTTACTTTTTTGAGCTTCTATAAAGAGGTTCCATATGTCCTTATGTT
TTGCTTCTTTTATAATAGAAGATTGTGCAAGACTTTCCTGTGAACTAAACCAGTTACATT
CTGCTATGGGATCCTCCCTTATAGTGAG
GenBank Accession BX288189 [GenBank]
Graphic View Graphic view of sequence BX288189 of line 410A07
Predicted Position of Insertion Chr5:26584137 - go to primer design
BLAST e Value 5e-179
Hit Clone Code (BAC ID) K1F13
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37