SimpleSearch - Line and FST details


Line specific information

 
Line ID 410C05
Vector Used pAC161
Line Availability available as T3 set from NASC (N439293)
Segregation Analysis 50:46:36
Confirmed for Hit At3g44010
Parent of DUPLO pair none
Parent of pair(s) 95972, 95973
Note

Gene hit At3g01435

 
Sequence (A. th genome BLAST matches underlined) 
>35-K017995-022-410-C05-8409
ATATATCCTGCAAGATTCACTACAACTTCATCTTATTATGGATTGGCGATAACATTATAG
CACATTTATGTACAGTCGAAGATCAACCAGGTACATGAACCATACAATGAGGCTGATATC
TTCGGACTTTATGATTATCTCTATGGGATCCTCCCTATAGTGAGAGTACAGTATCCCCAC
TTTGACCTCTTTTTTCTTTGTTCAAAAATGTAGATGTCCGCGACGTTATTATAAAATGAA
AGGACTTTTTGATAAAACGACAAATTACGATCCGTCTTATTTAGGGGCGAAAGCAATAAA
CAAATTATTCTAATTCGGAAATCTTTATTTCGACGTGTCTACATTCACGCCCAAAGGGGG
GCTTAAATGAGAAACTTCACGATCGATGCCTTGATTTCGCCATTCC
GenBank Accession BX288200 [GenBank]
Graphic View Graphic view of gene At3g01435
Predicted Position of Insertion Chr3:167024 - go to primer design
BLAST e Value 6e-46
Hit Clone Code (BAC ID) T13O15
Hit Gene Code At3g01435 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Expressed protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 410B05

Gene hit At3g44010

 
Sequence (A. th genome BLAST matches underlined) 
>35-K017999-022-410-C05-8409
TATCCTGTAGATTTCCCGGACATGAAGCCATTTACAAGTCAGAATCTTAATTGCCATATT
AACACAAAACTAATCTCACATAGTTAAGATAGAAGCCAAGTATAACAATCTCATACAAAT
ACTAATCTCTACAATAAAGAGAAGAATTGACAAACTATACAAAGTCAGAATCTAAAATTG
CCAAAATATAACAACACATATCTAATCACACATGTAACAACAAATACACAAATCATCAAT
AGACGATCAGATCCATTAGAGAACAAGGAAATGGTGTTCAAGTTCTATACTTCTAAGAAC
CAAACAAATCAAAGCAAAACGCGAGAGGTAGAGGAAGATGATTATACCATAAACGAGATC
CAGGACCGTACTTCTTCGGATGAGAGTTCCATACATTAGAGTGACCCATTTCGTCGATTT
GCTCACAGAGGAATAACAAACGGCGACGAGAGAGACTCTTCAAAACCCTATGG
GenBank Accession BX288201 [GenBank]
Graphic View Graphic view of gene At3g44010
Predicted Position of Insertion Chr3:15800759 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T15B3
Hit Gene Code At3g44010 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal protein S14p/S29e family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37