SimpleSearch - Line and FST details


Line specific information

 
Line ID 412E11
Vector Used pAC161
Line Availability available as T3 set from NASC (N439515)
Segregation Analysis 50:49:49
Confirmed for Hit At1g44350
Parent of DUPLO pair none
Parent of pair(s) 3140, 91488, 91492

Gene hit At1g44350

 
Sequence (A. th genome BLAST matches underlined) 
>85-K017997-022-412-E11-8409
NGATCTGTAGATTCCNGGACATGANCCATTTACAATTGATATATCCTGGATCAAGAAGTG
GTCCTTTGCTCGCGGGATGTGGAATTTTCCGGGCGGTTATCACTTCGGAAGATAGCCGTG
GCGCCGCTAATCTCCTTCTTGCAGCTTCTTCCGCGGTCATTAGTCTTCAAGGCATTGTAT
CCCGTGAAGCTATGGGATCCTCCCTATAGTGAGA
GenBank Accession BX288354 [GenBank]
Graphic View Graphic view of gene At1g44350
Predicted Position of Insertion Chr1:16836237 - go to primer design
BLAST e Value 6e-77
Hit Clone Code (BAC ID) T18F15
Hit Gene Code At1g44350 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation IAA-amino acid hydrolase ILR1-like 6
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit T32F12

 
Sequence (A. th genome BLAST matches underlined) 
>85-K018001-022-412-E11-8409
CAATCCATAAGTCTAGCCTAGATAACCCTTTATGATACCAATTGTGTATTATTCCTGAGA
ATACAAATTTAAATTCCAATTTCTACCACGAAGATAGCTTACTTTATAGGTATATATATT
TTCTGTCCCAAATCCGGAGAAAGCAAAAGTGATTTGAATTTAAATCAGAAACGCGTATAG
ATTGTGTATATATGTAAGTTAAAGGGCATGCATACCTTTTTAATGTTATTTAATATTAAT
CTTAATTCCATTCTTCATAGACTTTTGAATAAATTTTATTTTTTTCTTGAGTTTATAAGT
CAGGGAAATTGTCACCCACTTAACCACTATGGGATCCCCCTTATAGTGAGANNANNGATT
NANTCCTTCTACTATGGGATCCTCCCTATANAGAGAGTTGAAANCCACTCGCAAACACAC
GCCTATGGAACGTGGAATAAAGGGAAAACG
GenBank Accession BX288355 [GenBank]
Graphic View Graphic view of sequence BX288355 of line 412E11
Predicted Position of Insertion Chr2:14888608 - go to primer design
BLAST e Value 5e-139
Hit Clone Code (BAC ID) T32F12
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37