SimpleSearch - Line and FST details


Line specific information

 
Line ID 412F04
Vector Used pAC161
Line Availability available as T3 set from NASC (N439520)
Segregation Analysis 50:49:49
Confirmed for Hit At5g36870
Parent of DUPLO pair none
Parent of pair(s) 5493, 5524, 5574, 92361, 92366, 92371, 92372

Gene hit At5g36870

 
Sequence (A. th genome BLAST matches underlined) 
>30-K018001-022-412-F04-8409
TATCCTGTAGATTTCCCGGACATGAAGCCATTTACAATTGAATAAGAAAGGAGCAAAGAG
CCATGTACCCACCATGAACCATATCGAAATAGTGAACAACCCTATATAGGTTGGGCCAAA
TATGTGATACACGAGTAGGAGAATCCCTATGGGATCTCCNCTATAGTGAGANNNNNNNNN
NNNGNNNNNNNNNNGNNNNTTNNTCNTTCNNTNTNGNNNNAGNGNCCNNCTTNTTCTTTG
TTGGTNNNTGTTTTTTTGTNNGGGGTGANGTTNTTTTCCGTTGTTTTTTTGGGGGGGGGN
GATGGNTGTTTTTTTCTTGTTCCGATATCTTTTTTTCGACGTGTCTACTTTCGCTGCCCC
GTGGGTGTTATAATGAAAAACTACAATATCTATGTCTTAATTTCCATAT
GenBank Accession BX288363 [GenBank]
Graphic View Graphic view of gene At5g36870
Predicted Position of Insertion Chr5:14532799 - go to primer design
BLAST e Value 1e-56
Hit Clone Code (BAC ID) F5H8
Hit Gene Code At5g36870 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation glucan synthase-like 9
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g61310

 
Sequence (A. th genome BLAST matches underlined) 
>30-K017997-022-412-F04-8409
GCATTTACATGTAGATCTTAATTGTAGTGCTTGTTGTTAGTTACTTCAATGTAATAGGGT
TATAAACCCAGACATCGTTTGACCTCATTAGTTCTATGGGATCCTCCCTATAGTGAGACT
ATGGGATCCCCCCCATACCGAGAGATTGTGAATTTCCACATGTAAAGGGAACTCGACTTT
ATTCACACTGTAGGGGGTCATCTATAAAATGAGAGTTACGAGCCCGTCTTTATAAAGGGG
AAAGCTTACGCGTATTATTCTAATTCGGAGATCTTTATTTCGACGTGCCTACATTCACGG
CCAAATGGGGGCTTAAATGAAAAAATTCTCGATCGATGCCTTCATTTCACAATTC
GenBank Accession BX288362 [GenBank]
Graphic View Graphic view of gene At5g61310
Predicted Position of Insertion Chr5:24653507 - go to primer design
BLAST e Value 8e-36
Hit Clone Code (BAC ID) MFB13
Hit Gene Code At5g61310 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Cytochrome c oxidase subunit Vc family protein
Insertion Classification TS2TE (3')
Confirmation Status unknown


Last Updated on 10.06.2021 13:37