SimpleSearch - Line and FST details


Line specific information

 
Line ID 423A05
Vector Used pAC161
Line Availability available as T3 set from NASC (N440517)
Segregation Analysis 50:49:44
Confirmed for Hit At3g56590
Parent of DUPLO pair 12177
Parent of pair(s) none
Note

Gene hit At5g22760

 
Sequence (A. th genome BLAST matches underlined) 
>33-K017847-022-423-A05-8409
TGATCTGTGATTTCCNGGACATGAAGCATTTACATTGAATATATCCTGAAAAGCAGGTAT
CCGATTATTCTGTATTGGAGCAAAACGTGCAAGATGTTAAAGGTCCAGAGACAGAGGCCA
CTATTTTCAGGAACGCTATGGGATCTCCCCTATAGTGAGACTATGGGATCCTCCCTATTT
CCAGGCTCTTTTTTCCTCCCTATAGTGAGCGACCCTCCCTATATTAAAACCATTTGGACC
TCAATGTAGACACGCTATGGGATCCTCCCTATAGTGAGAGTATCTGATTCTCCCTATCGC
GAGTGTCCGGGATCCTCCCCATACGAAGGGGCCC
GenBank Accession BX289060 [GenBank]
Graphic View Graphic view of gene At5g22760
Predicted Position of Insertion Chr5:7575508 - go to primer design
BLAST e Value 3e-26
Hit Clone Code (BAC ID) MDJ22
Hit Gene Code At5g22760 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation PHD finger family protein
Insertion Classification CDSi
Confirmation Status failed, line belongs to a contamination group, please check line 422G03

Gene hit At3g56590

 
Sequence (A. th genome BLAST matches underlined) 
>33-K017809-022-423-A05-8409
TTTCCCGGAATGAAGCATTTACTGGCAAAAATAACCATTGTTCTGTTAAGATCACCCAAG
CGTTCAAGCGCTAATACCACAACCTGGCTCAAGAAAAGAAACAGAAGTTACGGAATGATC
AACATAGGAAACAATGAAATTCATGCAAGTGAGATTAGGGTGCTTAGTTACTTTGGTCAT
GGGAAAGCTTATTTCATCAGTGATATCATTCTCAAGCTGCATCAAATTGTCTTCCATGAA
CGAAATTGGTTTTCCAACATCAAAACTCGCCACTATTCTGTGATCTGCAAAAGAAACAAA
AACCAAAAAGCGCCATTATTGCTCCATCATGAAACATAGAGATAAATCATGACACAAGTT
ATAGGTAACTAAAAATTGTTGCTCCAGTGGGCAGGGGAATAAACAGAAAATGATACAGGT
GATTATAAACACATGCAAGTTGTAACATGAAAGAGAAATTAAACAACAGAAGTGCAGAGA
ACAAGTTTCATAATTCAAACCAAAACATCCTTGCCTGCCAAAGCAAGTGGCAGCAACTAC
AATAGATGTCTTAACCAAATCAGAATCACTAGGACCCCCCC
GenBank Accession BX289059 [GenBank]
Graphic View Graphic view of gene At3g56590
Predicted Position of Insertion Chr3:20966585 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) T5P19
Hit Gene Code At3g56590 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hydroxyproline-rich glycoprotein family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37