SimpleSearch - Line and FST details


Line specific information

 
Line ID 436A09
Vector Used pAC161
Line Availability available as T3 set from NASC (N441769)
Segregation Analysis 50:48:36
Confirmed for Hit At5g33340
Parent of DUPLO pair none
Parent of pair(s) 3099, 8142, 95492

Gene hit At5g33340

 
Sequence (A. th genome BLAST matches underlined) 
>65-K018191-022-436-A09-8409
GCGGATGAGGGTCTCTTATCGGATCGTCCCTATGATGCAGACCGCATCCTCGAGCTCGGA
GTAAAATTCAGTCGGTAATAACGTTAAAGTTGTGCCTGAATCGATGATGATGTTTCCCTC
GCTGCTTTCAGAATCTGAGCCTGAGTATTGGATTTGCTTGCTTCCCACGCTAATGGATTT
TAGGGTTAGGTAATAGAAGGTCTCTTGAGACGCCTTTGCGATCAGAGGAGTTGAGACAAC
TCCTGATCCCGACACGATGGCATTGGTTCCGAAGTTGATTTTACTCGTTTGATCCTTTTT
GGAAGTTAGAGGAACCAAGCAGTATGAGAATTTACCGTCGATGGAGTCGCCAAGTTGCTT
GATAAGCGAAACCGGACCACCACCTATGGGATCCTCCCTTATAGTGAGANNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNGNNNTNNNNNNNNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNCCNNACNNCCNNACCNNNCCANNCACCNCCGCNCCCAC
CCAACANCAAAAAACCANAAAATACAGCGCGAAAGAAACGNCCCGAAAACCGACAACCCC
GAACCCGGACGACGGCCCGCCAAGCAACCAAAACCAAAAACAAACGAAAGCACAAAAAAA
CCACACCCGAAACGCAAAACCCACAACACGGTGAGACANATACTAGTTCGGGCCCACAAC
TCAATCAACAGCGATGTACAAGAGGACAAGAGGAACCCAGGCCCCACACACACACTACTC
CATAAACA
GenBank Accession BX290399 [GenBank]
Graphic View Graphic view of gene At5g33340
Predicted Position of Insertion Chr5:12595545 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F19N2
Hit Gene Code At5g33340 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Eukaryotic aspartyl protease family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37