SimpleSearch - Line and FST details


Line specific information

 
Line ID 437D07
Vector Used pAC161
Line Availability available as T3 set from NASC (N441899)
Segregation Analysis 50:36:31
Confirmed for Hit At1g09570
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At1g09570

 
Sequence (A. th genome BLAST matches underlined) 
>52-K018192-022-437-D07-8409
TGATCTGTAATTTCCNGGACATGAAGCATTTACAATTGATATATCACATGTAGAATTTCA
TTTATTGTTGCTATTGATTGTTGTGTGTGAAGAATGAAAAAGAAATTAATATATTGGGTC
AAGGCTTTTGGGGTTTGGGCCTAACCTTATATTGACTAAGAACTATGGGATCCTCCCTAT
AGTGAGAAAAACTAATTTAAGTTTATTCGAAGAATTTAAATTTGTTTTATTTTTTATATA
AAAAGGGTAAAAAAATCGTTATTAAGGTTTTATTTTTTTTTCGTCAAACAAAATCCATAT
CGTTTTAACATCATTGTCAAACTTCGATTCGTTCTTATCGCAAATCCACGTTACCATGTT
TTCTTAGGAATTTTGCTTCTATCCTCTTAAAGTTAAATCTCCCCCTAAGTTTTTTGCAGT
AAATCTCCGGAGAAGATCGAATCGACAACGTCTTACCTATGGGATCCTCCCCTA
GenBank Accession BX290528 [GenBank]
Graphic View Graphic view of gene At1g09570
Predicted Position of Insertion Chr1:3100832 - go to primer design
BLAST e Value 3e-91
Hit Clone Code (BAC ID) F14J9
Hit Gene Code At1g09570 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation phytochrome A
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences

Gene hit K14B15

 
Sequence (A. th genome BLAST matches underlined) 
>52-K018182-022-437-D07-8409
TATCATGANATTTCCCGGACATGAAGCATTTACAATTGAATATATCACATGTAGAATTTC
ATTTATTGTTGCTATTGATTGTTGTGTGTAAGAATGAAAAAGAAAGTAATATATTGGGTC
AAGGCTTTTGGGGTTTGGGCCTAACCTTATATTGACTAAGAGCTATGGGATCTCCCCTAT
AGTGAG
GenBank Accession BX290527 [GenBank]
Graphic View Graphic view of sequence BX290527 of line 437D07
Predicted Position of Insertion Chr3:8259567 - go to primer design
BLAST e Value 1e-50
Hit Clone Code (BAC ID) K14B15
Insertion Classification Genome Hit
Confirmation Status unknown


Last Updated on 10.06.2021 13:37