SimpleSearch - Line and FST details
Line specific information
| Line ID | 440G05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N442221) |
| Segregation Analysis | 50:43:37 |
| Confirmed for Hit | At3g05690 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6823 |
Gene hit At3g05690
| Sequence (A. th genome BLAST matches underlined) | >39-K018208-022-440-G05-8409 ATTTCCCGGCCGGCATGATCAGTGTTTAACGCTCAAGTTTTATCTATTTGAGGGCAAAAG AAGTTAAGAGTTTACCAAGTGAGAAAGCTAAGTGCGTTGCAGAGTTGCTCTGTTTATCCA CACGTTGTCCTGTCTCTCCGACAGATCCGACCTTAACTCCGGCGAATGAGTCAGAATCGC CGGCGAGACTCTCCGGAGCCAACGGCTGAGATCCAAAAGCAGTCCACCAAGAAGTCTGTG GAGCAGAGAAGAGACCTTCTCTCACAGTTTGCATAGCCATCTCCAAATTCCAATTACAAA AAGTGAAAAATAGATAGTGCCTATGGGATCCTCCNTTATAGTGAG |
| GenBank Accession | BX290870 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:1678086 - go to primer design |
| BLAST e Value | 4e-158 |
| Hit Clone Code (BAC ID) | F18C1 |
| Hit Gene Code | At3g05690 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nuclear factor Y, subunit A2 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit T28I19
| Sequence (A. th genome BLAST matches underlined) | >39-K018216-022-440-G05-8409 TGATCTGTAGATTTCCCGGACATGAAGTCGTTGAGCATTGATATCTATCTGGCCTTCTAT GGGATCCTCCCTATATATGAGAGTTGTTTTATTTATACCATATAAAAATTGATAAGAGAA TGTGGTGTAATTTATTAGCTTGATTAGCTAATGTGGTGTAATTTATTGATAAGAGAAGGA GATCAATTATTGATTAGCTTGGATGTGTATATCCACACATATAGTATTACCAAATAATCG ACTTAAAACAGCAAGAACTTGACAAAAAATACCAAAATTTAGTTTAATTTTGCATGAAAG TGATCACGAGACAGATTTTCTCGTGTGAATGATTTTGTTGGAAGTAAAAAAGGATAGTGG GAGCAGTTGTTTAGGAGGGAAATCATAAGCACGAAGAGGTCCCTCTCTCCTTCCTTTGAT TTTGGTAATGATTATAAATTCCACCAAACATATATACCATTTTTAATAATCCAATTTTAG TGTCATTTATGTCTTTTCGACAATAGTTTTCTTGCCTTTTTTTTCTTTCTTTTCGAATAT TAGTTTTCTTGATTACACTCTCACTCTGAGAAAATTAGTCAAACAACGACTTAAGAAAAA AAGTCAACAACCGCCAAAGTTGCGACGGAGAACGCANACGTGAAACGCTTG |
| GenBank Accession | BX290871 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr4:17737243 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T28I19 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
