SimpleSearch - Line and FST details
Line specific information
| Line ID | 454D05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N443529) |
| Segregation Analysis | 50:41:28 |
| Confirmed for Hit | At5g23220 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 11105 |
| Note |
Gene hit At5g23220
| Sequence (A. th genome BLAST matches underlined) | >36-K018837-022-454-D05-8409 TGATCTGANATTTCCCGGACTGAAGCCATTTACATTGTCCATTTACGGACCTAATTTCCC ACAACCGATGCGTACTATGGGATACCTCCCTATACTGAGACGGAAGAGCTATCCGACGTT ACATGTTATTTGGAGAAGCAAAGTTGGAGTCTGCTATGCTTACCATATTGAGCTTTTTTT CTTAAGGATTTTGTCTAATATCTTTCATGTGATTCCCTTCTCGTAGGCGTTGCTTCGCTC TTTTGGCTATTTTGTTTTTCTGCAGGCGCTCATAATCTCAACATGTATCCTTTCAGAGTC TTTTTTTAATAAAAGTCATTTGACGAAGAAAATAAAAGTAACAATAGTACCCCTTGTATA TAGTAAGTGATTATTAGCAGTACTTGATATACATAAAACTGACCACTACTTCCAATATTT AAAAAATTGCTAAGAGCGCGGTAAGTAGATGGTCAATAAAGTATTGAGATAGCTTCATTT TGATGTCTTTATCCATATTTTAAGAAACTGGCCAGAATTCTACATGAATTTTTTGAATTT ATTTTGGCACAAAAAGAAGGATTAACATGTATCCTTTCATAGTTTTTGTATAAAGGTAAT GTGATTATATTATGAGATTTTTGTACCAAATCATCTATAAATTGAACAATTATAGCTTCT TTAGTGTATTCGTGTTGTAACTATGGGATCCCCCCCNTAAATTGAAGAAAAGGGNNAAAG GNTCCTACCATGACTTTAGATGTCCAAAAGGACCGGTTCTGGGACGGAAATGGAAACCGG |
| GenBank Accession | BX292461 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr5:7820081 - go to primer design |
| BLAST e Value | 9e-150 |
| Hit Clone Code (BAC ID) | MKD15 |
| Hit Gene Code | At5g23220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | nicotinamidase 3 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g01360
| Sequence (A. th genome BLAST matches underlined) | >36-K018835-022-454-D05-8409 TATCATGAAATTTCCCGGACATGAGCCATTTACATTATCCATTTACGGACCTAATTTCGC AAACCGATGCGTGCTATGGGATCCTCCCTATAATGAGANGCACGACCTATCCAACGATAC CTGTTATGTGGAGAAACGCTCTTGCAAACGCTATAGATTACAATATTGCACTTGTTTTGA TAACGAGGATGACACATACTCTTTCCTGCGGATTCGCTACTCGGGGGGGACGCTTCCTTT TTCTGGCAAGTTCCTCGTGAGGCAGGGTCCACTATTGGCTACACTGTACCGCGATGAATC TTTTTGTATGAACTTCCTTTGATCACAAGATGGTATTAATAAGAGCCCCCCTCCTGTGCC ACTAGAGTCCGATAACAGTGACTTGATATACAGCCTACTGAAAACAACTTCCGTTACCCA ATAATCTGCTAAGAGCGCATCTATGAGATGGCCGAAGGAGAATTGAGAGTGCTGCTTTGA CATGTTTGCATCCATATACTAC |
| GenBank Accession | BX292460 [GenBank] |
| Graphic View | 
|
| Predicted Position of Insertion | Chr3:138173 - go to primer design |
| BLAST e Value | 4e-07 |
| Hit Clone Code (BAC ID) | T13O15 |
| Hit Gene Code | At3g01360 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | plant viral-response family protein (DUF716) |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 401A09 |
|
Last Updated on 10.06.2021 13:37 |
gabi-kat.de 
