SimpleSearch - Line and FST details


Line specific information

 
Line ID 457F03
Vector Used pAC161
Line Availability available as T3 set from NASC (N443839)
Segregation Analysis 50:45:44
Confirmed for Hit At5g63070 At3g43970
Parent of DUPLO pair none
Parent of pair(s) none

Gene hit At5g63070

 
Sequence (A. th genome BLAST matches underlined) 
>22-K018859-022-458-F03-8409
TGATCTGTAGATTTCCCGGACTGAAGCCATTTACATTGAATATTGATAATATTTCAAGAT
TAGATTACATGGTTGGTAACAGCCATAATTAGATTACAAGATTAGTAACATTAAATAATT
GATAATATTTCAAAAATATTTACATTTACTCGGTCAATCTTTAACATTTAGGTAAGTTTT
CGATATTTCCGACGATCCTATGGGATCTCCCCCTATAGTGAGANCCGGAGGCAGCTTCTT
TTTCANGTTCGATACGTCTCTGATATCCGCTCCACGAGGATCAGCGCAAAGAATGGAACT
ATGGGATCCTCCCTATAATGAGAGAAAAAANCCGCTCTAATCACCAATTTCTTGTGGATC
TTCATCGGAAACCCCCGCCCCTTCCCCTCCAGGGCCATTAGTCCAAGAAAGATGACATGT
TTTGCATTCCTGGATCAAGAGGCCACTTCACTATGGGATCCT
GenBank Accession BX290988 [GenBank]
Graphic View Graphic view of gene At5g63070
Predicted Position of Insertion Chr5:25299923 - go to primer design
BLAST e Value 8e-70
Hit Clone Code (BAC ID) MJH22
Hit Gene Code At5g63070 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Ribosomal protein S19 family protein
Insertion Classification Promoter
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At3g43970

 
Sequence (A. th genome BLAST matches underlined) 
>22-K018853-022-458-F03-8409
ATAAGTGCGATAATTGTTCAGAAGATTTCTATGGGATCCTCCCTATAGTGAAGAGCCAAC
CGAGTATAAGACATCTTGGAGACGCACAACTCCATCGTCCTTTGAAGTAGCTACCCAGTC
ATGAGATGACCTGATCGTTCCCATTTCTTTCATCAACTCCGGAGGCAGCTTCTTTTTCAA
GTTCGAGACGTCTCTGATATCCGCTCCACAAGGATCAACGCTAAGAATGGAGCTATGGGA
TCCTCCCTATAGTGAGANNAAAAACCCACCCGAATTACCAATTTCTTGTGGATCATCAAG
GGAAAACGGTGCCCCTTCCCTTCTAGAGGAATGAGGCCAAGAAAGAGGACATGTTTTGCA
TTCCGGGATCAAGAGGCCACTTC
GenBank Accession BX290987 [GenBank]
Graphic View Graphic view of gene At3g43970
Predicted Position of Insertion Chr3:15777796 - go to primer design
BLAST e Value 3e-82
Hit Clone Code (BAC ID) T15B3
Hit Gene Code At3g43970 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation hypothetical protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37