SimpleSearch - Line and FST details


Line specific information

 
Line ID 461B08
Vector Used pAC161
Line Availability available as T3 set from NASC (N444180)
Segregation Analysis 50:50:39
Confirmed for Hit At1g18180
Parent of DUPLO pair 6877
Parent of pair(s) none

Gene hit F14P1

 
Sequence (A. th genome BLAST matches underlined) 
>58-K026071-022-461-B08-8409
TACATTGATTGTTTCTGTTTCTTTGTGCCTTGGAGCCGTATAAATGATGCTTTATACCGA
GGGCTCAACTCTCTGTATTCTCTTGAGGAAGATTACGGCCGTATGGGATCCTCCCTATAG
TGAGCCTAATTCTTCCTTACTATTCTAACTCTCTTTTTGTATATATTCTTGTTTGTCTTT
TTTTATGGGATCCTCCCTATTGTGAGATATATTACAAATTGAAATATCTAAGATTAGTTG
AAAATCGTAGTATGGGATCCTCCCTATAGTGAGCNNNNNNAGGNANACCTCCCTATNNTC
CCTCCTATGGGATCCCGTATGGAATCCTCCCTATAGTGAGCCGCATTAGTCCCCCCCTCA
TTGGAGCCCCCCCTTTTTCGCCCCTATTGTACCCCCCTTATGGTGGCTCTCCGTGGTGTC
CACTTTTTTGTTTTTTTTTTATCCCCCTTTCTTATTCGCTTCTTGTTATACACTGTGAAT
TTATCTCCTATTTTTTCTTCCTCCAGTCTTTTTA
GenBank Accession CR397411 [GenBank]
Graphic View Graphic view of sequence CR397411 of line 461B08
Predicted Position of Insertion Chr1:6795056 - go to primer design
BLAST e Value 4e-15
Hit Clone Code (BAC ID) F14P1
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit CR397411 [GenBank]

Gene hit At1g18180

 
Sequence (A. th genome BLAST matches underlined) 
>58-K026076-022-461-B08-8409
CATTGATTGTTCTGTTTCTTTATGCACTTGCGCCGTATACATCATTCTCTATGCCGAGGG
CGTCCACCCTCTGTATTGTCTTGAGGAAGATTACGCGCTGTATGGGATCCTCCCTATACT
GAGCCTAATTCTTCCTTACTATTCAAACTCTCTTTTTGTATATATTCTTGTTTGACTTTT
TTTATGTTATCCTCCCCATTTTGAGATATATTACAAATTGAAATATCTAAGATTAGTTGA
AAATCGTGGTATGGGATCCTCCCTATAGTGAGNNNNNNNNNNNNNNNNNNNNNNNNNN
GenBank Accession CR397412 [GenBank]
Graphic View Graphic view of gene At1g18180
Predicted Position of Insertion Chr1:6257689 - go to primer design
BLAST e Value 2e-13
Hit Clone Code (BAC ID) T10F20
Hit Gene Code At1g18180 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 3-oxo-5-alpha-steroid 4-dehydrogenase (DUF1295)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit CR397411 [GenBank]


Last Updated on 10.06.2021 13:37