SimpleSearch - Line and FST details
Line specific information
| Line ID | 469G01 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N445001) |
| Segregation Analysis | N/A (line seemingly not resistant, T2 plants grown without drug) |
| Confirmed for Hit | At3g19510 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 4455, 4466, 4474, 4563, 4578, 7336, 8439, 8442, 8481, 80903, 80905, 80914, 80916, 80929, 80931 |
Gene hit At3g19510
| Sequence (A. th genome BLAST matches underlined) | >07-K019031-022-469-G01-8409 TGATCTGAAATTTCCCGGACTGAAGCCTTTACATTGAATATATCCTGAAAATGGCTGGAT TACTCTTTCTTTTTCTTGATAATCGATTTCTATCTGGCTTTGGAAAAACCTCTGAATGGT ATTTTTCTTCTATGTGCAGGAGGAATATGACAATGTTCCGACTTCGTCAAGTGATGATGA CGATTGGGATAAAACTGCAAGAATGGGAAAAGAAGATTCCGAGTCGGAAGATGAAGGGGA CACTGTACCTCTGAAACAGTCTTCAAATGCAGAAGATCATACTTCTAAGAAACTTATACG GAAGTCGAAAAGGGCAGATAAAAAGGATACCTTAGAAATGCCACAAGAAGGTCCTGGAGA AAATGGTGGTTCTGGTGAAATTGAAAAAAGCAGCTCTTCAGCATGTAAACAGACAGATCC CAAAACTCAGGTAAAAAGATATAGCTGTCTTGAGGCTTTAAGGTGCCAATCTTACATTAT TATGAGGGAGGGAGCAATGGATTGAAAGGATCCCTCTTTTATGCAGAGACTGTACATATC TTTTCAAGAGAATCAATATCCAGACAAAGCCACGAAGGAGAGCTTAGCCAAAGAGCTACA AATGACAGTTAAGCAAGTAAGAAGTTTCTCCTAT |
| GenBank Accession | BX292970 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:6764054 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | MLD14 |
| Hit Gene Code | At3g19510 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Homeodomain-like protein with RING/FYVE/PHD-type zinc finger domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At2g24370
| Sequence (A. th genome BLAST matches underlined) | >07-K019027-022-469-G01-8409 GGATCCTCCCTATACTGACATACAGACAATGAAGGCCATGAAGTGGTTATTTTTTATACC TGAGAAAACCACCTTTGCTGGAGGAACCAACTACTAAAACCTCAATGGCCGCTTGGTTTA CGTATTCGACCAATGCTTTGGCAACATCGGACTCCTCAAGCAACACATCTTGGCATTGAA TCTGGACAGTTTTCATTGCACATTAACGAGATAAAGGATATATACAAAAGAGGAAAACAA AAACATAATGTAAACCAAGAAACTCACGTCTTTGCGTGTGCAGAAGCAACGGAAAGGAAG AAATATTTCTTTGGAAATGCCTTCTGGATCTCTGCATACCAATGAAGAATCTTGGCTCAG CTCTGAAACAAAATCACAAAGCATCAGAAACAAAGAAATCGAATGAAAACAGAGAAAAGA ACGAAAACGAAGAAGATAGGGTTTGTTTACTTGCAGAGGAAGCATGAAGAGAAGCGCTAT TATTCAATGGAGAAGGTCGAAGCTTGACGTGGACAAGAATGACGGATTGGCCTCGCTGCA ACAAATTATCAACAGCCCATTTAAGAGCGTGTTGGCTGCTTTTGTCTTTGTCTATTGCAA CAGCTACAACTCCGCTATGGGATCCCCCCCCAAAAAGAAAAAGAGGGATGCCTTGTGAGA TCCTNCCCGGNAAGGGAAATGAAACCCTCTCTNNNGAACCTTCTCTTAATTAACAACAAA TTAAAT |
| GenBank Accession | BX292969 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10372410 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | T28I24 |
| Hit Gene Code | At2g24370 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | kinase with adenine nucleotide alpha hydrolases-like domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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