SimpleSearch - Line and FST details


Line specific information

 
Line ID 478D06
Vector Used pAC161
Line Availability available as T3 set from NASC (N445834)
Segregation Analysis 50:15:14
Confirmed for Hit At4g12720
Parent of DUPLO pair none
Parent of pair(s) 12509

Gene hit F9F8

 
Sequence (A. th genome BLAST matches underlined) 
>44-K019029-022-478-D06-8409
AATAACAAAGACAAGTATCTATGTGGGTCCTGCCTATTGTACATAAAAATTAGTAACTTA
AATGTTAATTGGCCATTTTTTTTACGCCTATTATAAATCTATGGGATCCTCCCNTATAGT
GAGAGNGNNNNGGTCGGCCNCCCCCCCTNCTGCTCCTGCATCGGAACATTGTATTTGAGG
AGACCACCCTATTAATGGTTCCCCCCCCATGGGACGAACATCTTCTCGTCATGGAAGACG
AAGAAGGACGAGCACTGAACTGGACCTCTACACTAACATGACAGGAGGTGGTTGGTCGGC
TTCTTAAAACAACAGCCCCGCAGGCGGGGGGGGGAACCTCATACCGCGATGGTCGCCACC
GGAAAAAAAAAGGGGGATCCCGGGGGACCCCACAAAATAACCGGGGGGGGGAGATGAGAA
GAGGGGAAATAGAGAGAAAAGCGAACGCCAAACAGGGGGGGAAGCGCGACGCGCAAAAAG
TGGGCCGACCCACGCAGCAGACTCACCCCCGCAACCGTACCATCCAAGCGGGGAAAACCC
CGGACGGGGATATGAGAGGGGGGAAGANAAAACGGTGATAGAAAAAG
GenBank Accession BX293419 [GenBank]
Graphic View Graphic view of sequence BX293419 of line 478D06
Predicted Position of Insertion Chr3:3432522 - go to primer design
BLAST e Value 4e-16
Hit Clone Code (BAC ID) F9F8
Insertion Classification Genome Hit
Confirmation Status unknown
Other FSTs Supporting this Hit BX293419 [GenBank]

Gene hit At4g12720

 
Sequence (A. th genome BLAST matches underlined) 
>44-K019033-022-478-D06-8409
TGATCCTGTAGATTTCCCGGACATGAAGCCATTTACAATTTGTAGTAAATGGTCACGAGA
CGATACATGCTGAGAACTTAAAACCGGTTACGAGAAGATATTTTGGAAGAATAAACCAAG
TGTATGGTAACACTCTTAAGCCTCATATCTTTAAAAAGCACGTAAGCGTTGGGAGAATCA
AACCATCACTGGAAATAGACTATGGGATCCTCCCTATAATGAGATCCCGCACGGACAACG
TCTCTCTTTTATTCGCTTCTCAGCTCGACCTACAAATATTTTCATGCATGCAATTTCTAC
ATTATTGTAAATAAGCCAAAATAAGAAGAGAAGTATATATATGGTAGTGTCTATTGTACA
TAAAATTTATTAACTTACATGCCAATTGGCCATTTTTTTTACGCCTATTATAAACCTATG
GGATCCTCC
GenBank Accession BX293420 [GenBank]
Graphic View Graphic view of gene At4g12720
Predicted Position of Insertion Chr4:7489878 - go to primer design
BLAST e Value 2e-79
Hit Clone Code (BAC ID) T20K18
Hit Gene Code At4g12720 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation MutT/nudix family protein
Insertion Classification TS2TE (3')
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37