SimpleSearch - Line and FST details


Line specific information

 
Line ID 478G10
Vector Used pAC161
Line Availability available as T3 set from NASC (N445874)
Segregation Analysis 50:48:35
Confirmed for Hit At5g52965
Parent of DUPLO pair none
Parent of pair(s) 77533, 77575, 77616, 77656, 77695, 77770, 77806, 77908, 77940, 77971, 78001, 78058, 78085, 78111, 78136, 78160, 78183, 78227, 78229, 78232, 78234, 78238, 78240, 78241, 78242, 78243, 78244, 78246

Gene hit At5g52965

 
Sequence (A. th genome BLAST matches underlined) 
>79-K019033-022-478-G10-8409
TCCTATGGGATCCTCCCTATAGACAGGAATGTACACTCTAATTAATCATTACCTCCAAAG
GCTAATAAGTTTCAATGTTTATTTTGTTAGCAAAATGTGAACTATATCTTGGAAGAGTTC
TCTTTTTATAGTTTTTCTCAGTGACATAAAATTTCAATATTTTCCTTTTATATAATAACT
CTTATAAATGTGTTTTGTTGGTTGCACAAAAGAAAAACATTGGAACCGACCAAAAAAAAA
AAACTTGGGACCCCCCCAAAAAAAAAAATTGGGAAAATTTGCCCTCGATTTCCCCCCCCC
CCCCCAAATTTTAATTAGGGATATTTATGGTGGGTTTTTCCCCAATAATTCAGTTAAAAA
AGGGGGGGGGGGGGGGTCCCCTTTTTTCCTTTTCCCAAAACAAAACCAAAAAACAAAAAG
CCTTGGGGATGCTTTTTCAACCCCCCCCTTCCAAAAGGAAAAACTCTTCCCCCTTTTTGC
TTACAAAAACACTCCCAAAAAAATTTTTTAGGCGTCTGTTTTCCTTTTAAAAACCCCGGC
GAAAAAAAAAAAGTGGGGTTCACCTTTCGGGCGGAAAATCCTCCAAGTTGGGGGTTCCTG
GGGACCTTTGTCTCCCGGTTTTTTTTAAAAAGGGGAATTTTTTTGTTTCTTTTTAGAAAA
AAATTTTTCTTTTTGACCCAAAATAGAAAAAACTGCCTCTTTGTTTTCCAAACACATGGG
AGGTGGTGGGAAACACTTTTAAATTTCCCAAAGTTAAAATTTTTGTTTTCT
GenBank Accession BX293435 [GenBank]
Graphic View Graphic view of gene At5g52965
Predicted Position of Insertion Chr5:21479166 - go to primer design
BLAST e Value 8e-95
Hit Clone Code (BAC ID) MXC20
Hit Gene Code At5g52965 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation egg cell-secreted-like protein (DUF1278)
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX293435 [GenBank]


Last Updated on 10.06.2021 13:37