SimpleSearch - Line and FST details
Line specific information
| Line ID | 493G05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N447309) |
| Segregation Analysis | 60:52:48 |
| Confirmed for Hit | At2g19930 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 68514, 97119 |
Gene hit At2g19930
| Sequence (A. th genome BLAST matches underlined) | >39-K019652-022-493-G05-8409 TTTACATTGAAGCATTGTGTATTTACCATTGAAGCCATATTGGTAATTACTCTTTCTTTT TCTATTGTCTCGTCTCATCATTAATCGGAGTAAGATTGTGTTTTCTGTAGATATTCTCTA AAGCTGTTTCAATCCGACCCGAAAGAGCGATCCTTATCCTCGAAGAAGCTTGATTCATGC TGCGAAAATTTATCATTTTTCTTCCCGTTCGTCGGAATCTCACACTTTCTTCTTCTTCTC TCTTACTTCAGAATTTAAGGGTTGCCAAAAAAAAATACCCAGTAGAGAAACAGTTTCTAC TGTTAGTGATTGGATTTGATTTGACGATGACACAAGAAGAAACAGAGAGGAAATAAAAAG GTCGGAGCTTTTTCTCTATGGGACTCCCCCNTTAGAGGAGGANTNGGAGNANACCACCGT GTCGTGCTCCACCATGTTGACAAAGATTTTCTTCTTGTCATTGAGTCAGAAGAGACTCTG TATGAACTGTTCGCCAGTCTTTACGGCGAGTTCTGTTAGGTCCTCTATTTGAATCTTTGA CTCCATGGGAATTGGGGATCCTCTA |
| GenBank Accession | BX532693 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:8612294 - go to primer design |
| BLAST e Value | 2e-160 |
| Hit Clone Code (BAC ID) | F6F22 |
| Hit Gene Code | At2g19930 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | RNA-dependent RNA polymerase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g16807
| Sequence (A. th genome BLAST matches underlined) | >39-K019625-022-493-G05-8409 TGATCTGTNATTTCCCGGACATGAAGCCATTTACATTGAAGCCATTTTTTATTTACCAAT TGAAGCCATATTGGTAATTACTCTTTCTTTTTCATATTGTCTCGTCTCATCATTAATCGG AGTAAGATTGTGTTTTCTGTAGATATTCTCTAAAGCTGTTTCAATCCGACCCGAAAGAGC GATCCTTATCCTCGAAGAAGCTTGATTCATGCTGCGAAAATTTATCATTTTTCTTCCCGT TCGTCGGAATCTCACACTTTCTTCTTCTTCTCTCTTACTTCAGAATTTAAGGGTTGCCAA AAAAAAATACCCAGGAGAGAAACAGTTTCTACTGTTAGGGATTGGATTTGATTTGACGAT GACCCTAGAAGAAACGGAGAGGAAATAAAGAGGTCGGAGCTTTTTCCCTATGGGATCTCC CCCAAAAAGAGGGAGANCCTGGCTCTAATAACCTCGGACAAACATCATTGTCCTTCAATT TTTGGTGACTCATTTTCTGGTTGGGGTCTCCTTTACACATTCACTTTTCTCCAGGAACAG ACAATTCAAGTCCATCACTTGTATCCAGCAACGGCGATTCATAGACATAGCTGCGAAACC ATTTACCTAAATCAGGGAGGGTCTGAGAAGGAAATGGACCCAACCAGATTAAAGTTACAA ACAAATCCATCAATAGCACATACATTCACAATAATCATCCAAAAGAGAGTCTACCCAGAA GGAAGTGATTCATCAATAACACCACCCAGGATTTGCTTTGTTGACCACATCTACTTCGAT TTCAATTTCATTTGATTGAAAAAGACAATGGTAACGATTCATATACATAACTGGGAAAAC CAATCGTAAATATCCTGGTGGTTCTGTAACAAATACCCAAATAAAAAATGTTAGAAAAA |
| GenBank Accession | BX532692 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:9458286 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g16807 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | ATP-dependent caseinolytic protease/crotonase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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