SimpleSearch - Line and FST details
Line specific information
| Line ID | 496E05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N2021579) |
| Segregation Analysis | N/A (line seemingly not resistant, T2 plants grown without drug) |
| Confirmed for Hit | At4g11260 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 10761 |
Gene hit At4g11260
| Sequence (A. th genome BLAST matches underlined) | >37-K019655-022-496-E05-8409 TTCAAGCTCTGCTTGAAACCGTCTGATGCTATGGGATCCTCCCTATAGTGAGGGATCTTA AGAAGATCAATACTCCCACTTCTTGAGCTCCATGCCATCTGGTGGAGTGCTCTCCACTTT CTTAGTCCCAACTTCTTTCCAGTTTGTCGACAGGACCGTCCCATTCGACTCTGCCTGTCA AACCCAAAAACCACCCGAGAGGAAAATCTCATTAGTCGAAGAACAAAGCAGAGTTATTAA ACCAAAATTTTAAAGACCAAAGATAGATTTGCTCACAAATGATTTGTTCATTGCCCGCCT CATGTCTTCATCTGCACTCGAGTATATGTCGCTGAAAAATTTGTTCATAGCTGCATCTCC ATCAAGCTTCTCATCCTTCTCCTGCGAAATTCAAAAGTGATAAGCAGAAAGAACAAAGTA CAGCAAAGCCTCTATGGGATCTNCCCNAAAAAAGGGAGAGAANNNACNNNAGGTGGAATT ATCACGNTGGGCGGAAAGAACCCAATCCGCCTCAAAGATGACCCCGCCAATAGCGTAGTT AAAAACATCAACCTCATACAAAACGGTCCGTGCGAGGTCTTGAACGCGCGGTACCCTAAA AGCGCGGTAAGAACAGTCCCGCCTTAAAGGGGAGGTAAGTTGGCTACAACCGCTCCGCTT CCCTCGGGCCCTCTATGAGATCTGCCAACACAGAGACGAGAACACGGGCCAATACTCAAG CCACCGTCCGCAGCGCGCGAATCCGTGGCTGTTTACCCGTCGAGCTGGGCACAAACCGCA TAACCCCTGCGCGCCCCCCGGTTCAAAAAGACAAAAGAAGAAG |
| GenBank Accession | BX532962 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:6851439 - go to primer design |
| BLAST e Value | 0.0 |
| Hit Clone Code (BAC ID) | F8L21 |
| Hit Gene Code | At4g11260 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | phosphatase-like protein |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At4g25680
| Sequence (A. th genome BLAST matches underlined) | >37-K019628-022-496-E05-8409 AGATTCCCAAAAAATGGCTTTACCTGGGATCTTTGGCACACCAAGCCGGTCACAGAGTAT ATCGCAGAAGTGATTGCTATTTTTTGACAACAAATCATAAGTGTGTCCAGGCCATTCCCT GCTGAGTTCACGCAACATCTGATTCACCATGAAGATTGTGCAATCTGTTTTGCCAAGGAC GATTTTCTCACGGTATGTGTACATTGGATTCTTTCCACTCGGACAGCTGAATACACCAGT CCCTATGAGATCCTCCCCCTAGAACAGAGACATGTCTTCATCTGCACTCGAGTATATGTC GCTGAAAAATTTGTTCATAGCTGCATCTCCATCAAGCTTCTCATCCTTCTCCTGCGAAAT TCAAAAGTGATAAGCAGAAAGAACAAAGTACAGCAAAGCCCCTATGGGAT |
| GenBank Accession | BX532961 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:13089486 - go to primer design |
| BLAST e Value | 2e-126 |
| Hit Clone Code (BAC ID) | L73G19 |
| Hit Gene Code | At4g25680 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | PPPDE putative thiol peptidase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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