SimpleSearch - Line and FST details
Line specific information
Line ID | 500E01 |
Vector Used | pGABI1 |
Line Availability | available as T3 set from NASC (N447953) |
Segregation Analysis | 50:18:11 |
Confirmed for Hit | At4g17695 |
Parent of DUPLO pair | none |
Parent of pair(s) | none |
Gene hit At4g18490
Sequence (A. th genome BLAST matches underlined) | >05-K019227-022-500-E01-CR3S TGTATTTGATTTGTAAATACTTCTATCATAAAATTTCTAATTCCTAAAACCAAAATCCAG GTACTCATAAAGTTTCTAACCTGTGGGACGGATCCAGTGGTAGCTTTTCACTCAAATCTT GTACCTTGGCAGTTTGGCTTGTACGAGTGCCTGGTGATATTTTGCCTGAGAGGGTTGTTA GAGAATGTCCAGCATCTGAGTTATACAGTGCTCCTTTAGTGTTATCCTGTATTTCTGCCT GAGTGTCTGTACCCATTTCTTCCTGTTGATGTTCTATCTTGTCTGAACATAAATGAGATG AGATGCTTGGTGAAGTCTGTTCTATCTTCTCATAACTTGATTCCATGGTGGTAATCATTT TCTTGTTGGCATTTTCTGGATCTATAGGACAGTCTTCTTTTGTACCAGACCTGCAGAGTT CATGGATATCTGGACTGGTTTCTCTGTTTACTGCAATATGTGCAATCTCAGAAGCATGTA ATGGCGAGGGTGCTATGGTCTCATTTGAAGGACATGGTTCATTCTTTTCTTCAACCTTTG AACATGATGTCTTCAATGGTGAAGTATCTACGGATTGAGGTTGCACACACATTGTATGAG TTTGTGAGGCTTTTTTTCTTGAACCCCTGAGTGATTCCACCGCCTCAAAATCTCCCATGC TCTCTAATGCAGCTTGATTCGAGTTTTTGCTCTTATTAACAACAGAATATCTGTAGTCTT GGTATTTTGGCTCTCTTTTTCAGCTGAAACTTTTGCCTGACATCTGTGTTTGCCTTGGAG GGACTTGTCTA |
GenBank Accession | BX537032 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:10206187 - go to primer design |
BLAST e Value | 0.0 |
Hit Clone Code (BAC ID) | F28J12 |
Hit Gene Code | At4g18490 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | hypothetical protein |
Insertion Classification | CDSi |
Confirmation Status | unknown |
Gene hit At4g17695
Sequence (A. th genome BLAST matches underlined) | >05-K019575-022-500-E01-8409 TGATCTGTAGATTTCCGGAATGAAGCCATTTACAATTGATATATAAGCATTATACCCCTC CTTTTTCCCATAAAATTCATCAAGATTATCTCAAAATCATTCACCAATTCTCTCTTCTTA TGGAGCTTTTCCCTTCACAACCTGACTCGTATGGTATCTCCCCTATAGTGAGAGNNNGGG ATCCTCG |
GenBank Accession | BX533373 [GenBank] |
Graphic View | |
Predicted Position of Insertion | Chr4:9850770 - go to primer design |
BLAST e Value | 2e-49 |
Hit Clone Code (BAC ID) | FCAALL |
Hit Gene Code | At4g17695 [Araport] [TAIR] [MIPS] [SIGnAL] |
Gene Annotation | Homeodomain-like superfamily protein |
Insertion Classification | TS2TE (5') |
Confirmation Status | confirmed, show confirmation sequences |
Primer and wt-amplicons | show primer details |
Other FSTs Supporting this Hit | BX533371 [GenBank] BX533371 [GenBank] BX533372 [GenBank] |
Last Updated on 10.06.2021 13:37 |