SimpleSearch - Line and FST details
Line specific information
| Line ID | 511D04 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N449000) |
| Segregation Analysis | 50:41:24 |
| Confirmed for Hit | At4g17550 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 2251 |
Gene hit At4g17560
| Sequence (A. th genome BLAST matches underlined) | >28-K021258-022-511-D04-8409 TAATCAATGTTGTATATTACCGTGTGCTATGCCCATCCATTAAGAGATGTGTTGCCAACT CCAAAATAATGCAATGTTACATACCCTCGAGATATCGCTCGCTCCACCTAAAGTATCGCT CACAATGAAAATTCATCTCTATCATCGCTATACGTGGGGGCAAATAAGAACCGAATTACC AATTATGCCACTTTTCCACGTACGTCCCTCCTTATTCTCCATTAACTCATAGTTTGCTAC TCCTATGGCTATGAGCTTTCATCGTCTTCCTCATGTTTAAATATACGAAAGCTTATGAAA TCTCTATTTTCACTTAATTCATTATTGTTGATTATTTGTTTATATGGGATTTTTAAGTCT TGCATATGATACGCCGAAACCCTATCCATCATCCAAGAATTTAGGGTTTTCTTCCTTCCT ATCTGTGCACCATCATGGATTCTCTATATCACTTTCTA |
| GenBank Accession | BX649865 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:9780091 - go to primer design |
| BLAST e Value | 8e-69 |
| Hit Clone Code (BAC ID) | FCAALL |
| Hit Gene Code | At4g17560 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Ribosomal protein L19 family protein |
| Insertion Classification | Promoter |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
| Other FSTs Supporting this Hit | BX649865 [GenBank] |
Gene hit At4g02220
| Sequence (A. th genome BLAST matches underlined) | >28-K021274-022-511-D04-8409 AGCCATCATACTCATTGCTGATCCATGTAGATTGTTCAAATTTGCTCAAAAGAGCAGAAC CTATGGGATCCTCCCTATAGTGAGACTATGGGATCCTCCCTATAGTGGGCTACACTGAAT TGCTAGCCCCCATTTGGACGTGAATGTAGACAAACTATGGGATCCTCCCTATAGTGAGAG GCTATGGGATCCTCCCTATAGTGGGCGACACTGAATTGGTAGCCCTATGGGATCCTCCCT ATAGTGAGAGGCTATGGAA |
| GenBank Accession | BX649866 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:977808 - go to primer design |
| BLAST e Value | 1e-08 |
| Hit Clone Code (BAC ID) | T10M13 |
| Hit Gene Code | At4g02220 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | zinc finger (MYND type) family protein / programmed cell death 2 C-terminal domain-containing protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At5g34780
| Sequence (A. th genome BLAST matches underlined) | >28-K019921-022-511-D04-8409 CCTTGCAAAGAATTTTGCTACCATTTTTGTTCTTCTCCTCCACCTGCAAATATACGATAC CATAAAGAGCGGTGCACCCGCATGTAGAATTCTGGTCCGAGGATAATTTGGAAGACAACT TTATTTAGAAAGTCTCGCCTCTCAGAGTA |
| GenBank Accession | FR811408 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr5:12961548 - go to primer design |
| BLAST e Value | 9e-39 |
| Hit Clone Code (BAC ID) | T3J11 |
| Hit Gene Code | At5g34780 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Thiamin diphosphate-binding fold (THDP-binding) superfamily protein |
| Insertion Classification | 3' region |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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