SimpleSearch - Line and FST details
Line specific information
| Line ID | 515A05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N449349) |
| Segregation Analysis | 50:39:38 |
| Confirmed for Hit | At4g21600 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 83979, 83980, 83981, 83982 |
Gene hit At4g21600
| Sequence (A. th genome BLAST matches underlined) | >33-K019947-022-517-A05-8409 GTGAGTAATCATCCTATGGGATCCTCCTATAGTGAGAGAAACTGTATGAAGCTGGAGGAA AAGATAATCTCACGGCAATACTCGTAGTTGCACCTGTATTCAGGTGTGTTAACATAGTGC AAAGTACTATGGGATCCTCCCTATAGAGAGAATAGTACCAACACAAGAGTATGGCTAATC TTTATGTGGATTATGATTTTCGCAGCCCTTGCATACTGGTTTTCTTGGAGACCTATGGGA TCCTCCCTATAGTGAGATCNGGAGGCGATGAAAAGAACTGTTCTGCCAACTATTTATACC CCGGTTATTGATACTACTTTTTTTTGGGCATCCGCATTGGATAAAAAAAAATACAGCTCA CTAAAAATTATTTTTGATCTCAATACATAATTTCACATTTTTCGGAGGAGGAAATTGTTT GAATGAC |
| GenBank Accession | BX535337 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr4:11486240 - go to primer design |
| BLAST e Value | 3e-35 |
| Hit Clone Code (BAC ID) | F18E5 |
| Hit Gene Code | At4g21600 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | endonuclease 5 |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At5g20280
| Sequence (A. th genome BLAST matches underlined) | >33-K019971-022-517-A05-8409 TATCATGAGATTTCCCGGACATGAGACATTTACATTGAATATCTCCTGTATGGAAACATA TACTCATGGAAACGTAATCAGAACTGAAACATGTATGAAGCTGGAGGAAAAGATAATCCT CACCGCAATACTCGGAGATACACCTGTATTCAGGAGTGTTAACATACTTGCAAAGCGCTA TCGGCGATGCTCCTCTATAGAGAGATAGTACCAACACAAGAGTATGGCTAATCTTTATGT GGATTATGATTTTCGCAGCCCTTGCATACTGGTTTTCTTGGAGATCTATGGGATCCTCCC CTATAGTGAGATTATTAGGTGATGTCAAGTACTGTTCTGCCAACTATTTAACAACCAGCT ATTGATACAAGCAGATTTTGTGCAACCAAATTTGATAAAAAAAATTTCAGCTCATCACAA ATTATTTTTGATCTCTCTCCCTATTTTACTATTTTTCCGAGTAGGATAGTGTTTGAAGGT TATTTACAAGTTTGTGGCTCAAAGACGCAACGTTACTTTCTATGGG |
| GenBank Accession | BX535338 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr5:6850192 - go to primer design |
| BLAST e Value | 1e-99 |
| Hit Clone Code (BAC ID) | F5O24 |
| Hit Gene Code | At5g20280 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | sucrose phosphate synthase 1F |
| Insertion Classification | TS2TE (5') |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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