SimpleSearch - Line and FST details
Line specific information
| Line ID | 529C05 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N450717) |
| Segregation Analysis | 50:27:24 |
| Confirmed for Hit | At2g30615 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 6535, 6556, 10676, 85695, 85794, 85825, 85831, 85853, 85857, 85862 |
Gene hit T29E15
| Sequence (A. th genome BLAST matches underlined) | >35-K023730-022-529-C05-8409 ATTCCCGAGACTTGAATTTTCGCTTGATTTGTGTGTGACACCCAGAACTGAATCGACACT TGCCAGAATCTAAACAGCGTCCTCACATCACTATGGGATCCTCCCTATAGTGAGCTCTAT TATTCCTCATCACAGTCTTCATTCACGTTCTCATACTCTAATTAATCTTTGCCGTTGTCA ATCTATTTCTCTACAAACACAAAATCTGTTTTATAGCATGCACCAGATATGGTGTTACCA TAAATTTCTACAAAGTTGAAATCGACCACAATGCACTCAAACTATGGGATCCTCCCTATA GTGAGTCGTATTAATCNATGNTTTTCTACGAAATAGAATTGCAGTTCNCTCCTTCCAGAA GATACCCATTTCATCTTCAGATTGGTCTGATATTATGCGAAAATATACCCTCATATACGT AACTACTGACAGTTTGAGCTACCGATTTCATGGTACCCAATTGACCAAGATATCCTTATC TGCTACGTCTTATTGTCACCAAAGTAACAATATTACAATAAT |
| GenBank Accession | BX891222 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:10164856 - go to primer design |
| BLAST e Value | 5e-76 |
| Hit Clone Code (BAC ID) | T29E15 |
| Insertion Classification | Genome Hit |
| Confirmation Status | unknown |
Gene hit At3g53190
| Sequence (A. th genome BLAST matches underlined) | >35-K020702-022-529-C05-8409 NAATGGACCGAAATCCGGACATGAGCCTTTACAATTGAATAATCCTGATACCACCTTTAC CTCCCAACTCGTACTGTCCCAACCCGATACCACAATCTGCTATGGGATCCTCCCTATAGT GAGTTATCTTCACCCAATAATGAGCATTGAATATTATCAATCCTTATGGAAAATCATACC CACTAAATACCATTTTTTTTTCTATTCAAAAATGCAAATGGCCCCACCCTTATTA |
| GenBank Accession | BX546591 [GenBank] |
| Graphic View |
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| Predicted Position of Insertion | Chr3:19714705 - go to primer design |
| BLAST e Value | 2e-14 |
| Hit Clone Code (BAC ID) | T4D2 |
| Hit Gene Code | At3g53190 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Pectin lyase-like superfamily protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
Gene hit At2g30615
| Sequence (A. th genome BLAST matches underlined) | >35-K023803-022-529-C05-8409 CGCGAAGAAGCCATTTACAATTGAGTATATCCTGGTACATGATTTACTTTAGAAGGACCT TTTGATATGAAGAAGAGTCCACAATCTTCTCATGGAATCCTCCTTATACTGAAGTGTCTG AATCGATAAAATGGACTTCAATTTGTTTCTGGAATAAAATTGAACAGCATCTTTTCACTG TCATGGAAGAAAAAATTCCCTTGCTTACAAACTGTCACTGGTCTACACCACAACCTCCAT ATCCAAGGGTGAAGAGCTCTATGCTATCCTCCCTATACTGAGGTGAANAATATTCTCCTT TTTGTAAAAGCCATATTTCATTTCATCCACGTAGAATGTGCGCAGGGCTATAAGAGGACG AAGATACATGTTTCTTCTTCTAATTGGTAAGATATGACGTTTTTTTAGATACACATTTAA TCTTCAAATTGTTCTGAGATTATACGAAAATATACACTCATATACTTAAATACTGACAGT TTGACCTACCAATTCAGTGTAGCCCACTATAGCGTTGATTCCCTTTTCCAAGATACCCAT TTAATCTTCTTATTGGTCTGA |
| GenBank Accession | FR811701 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr2:13041907 - go to primer design |
| BLAST e Value | 2e-51 |
| Hit Clone Code (BAC ID) | T6B20 |
| Hit Gene Code | At2g30615 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | F-box/LRR protein |
| Insertion Classification | CDSi |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
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Last Updated on 10.06.2021 13:37 |
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