SimpleSearch - Line and FST details


Line specific information

 
Line ID 532F01
Vector Used pAC161
Line Availability available as T3 set from NASC (N451037)
Segregation Analysis 22:19:11
Confirmed for Hit At3g20740
Parent of DUPLO pair none
Parent of pair(s) 8000

Gene hit At3g20740

 
Sequence (A. th genome BLAST matches underlined) 
>06-K020364-022-532-F01-8409
CCTCAACCGAATCCTCCCAATCGACATCCGGTTAACTCTGGCCGCGTTGTTTTCAACCAT
CTGGCTACGGGATCCTCCCTATAGTGAGTTCTCGACGTACGTCCAAAACTCTATAGACAG
CCAAAGAATAAGAAGATCTTACAAACGAACCACAAGACATTTTTCTCAAAAGGTTTTTTA
AAATGGAAGTTTATTACAATATGTGCTCGATCGTACCTTTCATTGACCATATTTTAATAG
TGGTGTCCATACCACAGCTATGGGATCCTCCCTATAGTGAG
GenBank Accession CU589504 [GenBank]
Graphic View Graphic view of gene At3g20740
Predicted Position of Insertion Chr3:7249967 - go to primer design
BLAST e Value 2e-85
Hit Clone Code (BAC ID) MOE17
Hit Gene Code At3g20740 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Transducin/WD40 repeat-like superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details

Gene hit At5g20810

 
Sequence (A. th genome BLAST matches underlined) 
>06-K020373-022-532-F01-8409
AATGCTGACCGCCAATAATTGGCCATGTAGGTCTGCCCTTTTAAATCTCCTTAAATCTCC
TCAATTGAATCTCCCAATTGATACCGGTTAACTTGGCCGCGTTGTTTTCATCCATCTGAC
TATGGGATCCTCCCTATAGTGAGANNANNANNAANNANNAATTANCNATTTTTTTTCAAT
TCAAAAATGTAAATNTCNNCANCATTATTATAAAATATGGATGAAAATAATTGATAAAAT
TAAAGGTTATAATTGGAAGAATTTTTGAGGAAATTTAAGGAGAAATTTAAGGGAAATTAG
AGGTCTATATTTGGAGGNTATATTTAACAATTTAATACGGGGCTTTTGTCCGGGAAATTA
CNTGGATACCAATGAATATGAGGGCAATATGGAAAAAAAAAAAAAAAAAGTAAAATTTTT
TTTCATTCAAAAATGTAAATCTCGCCACGTTATATAAAANNNNNNNNNNNNNNNNNNNNN
NNNNNN
GenBank Accession BX546676 [GenBank]
Graphic View Graphic view of gene At5g20810
Predicted Position of Insertion Chr5:7044890 - go to primer design
BLAST e Value 6e-14
Hit Clone Code (BAC ID) T1M15
Hit Gene Code At5g20810 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation SAUR-like auxin-responsive protein family
Insertion Classification CDSi
Confirmation Status unknown


Last Updated on 10.06.2021 13:37