SimpleSearch - Line and FST details


Line specific information

 
Line ID 534A11
Vector Used pAC161
Line Availability available as T3 set from NASC (N451179)
Segregation Analysis 50:37:35
Confirmed for Hit At1g77330
Parent of DUPLO pair none
Parent of pair(s) 1949, 3627, 9788, 93989

Gene hit F13M14

 
Sequence (A. th genome BLAST matches underlined) 
>81-K020375-022-534-A11-8409
CATTGAAAGCACCACATCTATAAAGAAGATCACCTTCATATGCTGTAATATTCCTATGAT
ACTCCATCCTATGGGATCCTCCCTATAGTGAGATATATTGAATTGTCAGTTCCCATTTGT
ACGTTAATGTGGACACTCCGATTTGGACATTACTGATTTAAAAAAATTGGGAATTGGTTT
TGATGAGGGGAACGTGAATGTGGAAGCTTATTTTTGGAGATGACTGTAAACAAATTATTC
TATTTCGGAAATCTTTATTTCGACGTGTTTATTTTCTTGTCCTATTGGGAGCTACCATTT
CATTGTATCTCACTATAGGGAGGATCTTTTATTTTTTAGTATTGGGAGGATCTTGTAGGT
TTTTCTTTTTTTTTCTCCTTAGTATGGGTTGTTTTCTTTTCTCCGTATTGGGAGGAGNCT
CCGTTTTTGTTGGAATTGGAAATTTGGAATGGAC
GenBank Accession BX546748 [GenBank]
Graphic View Graphic view of sequence BX546748 of line 534A11
Predicted Position of Insertion Chr3:3253870 - go to primer design
BLAST e Value 1e-27
Hit Clone Code (BAC ID) F13M14
Insertion Classification Genome Hit
Confirmation Status unknown

Gene hit At1g77330

 
Sequence (A. th genome BLAST matches underlined) 
>81-K020363-022-534-A11-8409
CACACTCTCTCAGTCTCTCTGTTCCCACGTGCTTACCCGCGTACGTACGTAGCCGGTGAA
CCACGGTACTCCACCGGAGCTTCTAAATAAGGTGAAGAAGCTGAGCTCAGATTGCTACAA
AACAGAGAGAGAAGAAGCATTCAAGACTTCTAATCCCGTGAAGTTGCTCAACGAATTGGT
TCAAAAGAACTCTGGCGAGAAGCTATGGGATCCTCCCTATAGTGAGATATATTGAATTCT
CCCTTTCCATTTGTACGTTAATTTAGACACTCCAATTTTTACTTGATTGTATACCCATAA
TTGAATTGTTTTTTCTGAATGAACTAGTGTTGAATCCCGTTCTTTTGAGTTGTCAAAGTA
ATCTTCCTTTTCTTTATATC
GenBank Accession CU589581 [GenBank]
Graphic View Graphic view of gene At1g77330
Predicted Position of Insertion Chr1:29064315 - go to primer design
BLAST e Value 6e-79
Hit Clone Code (BAC ID) F2P24
Hit Gene Code At1g77330 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation 2-oxoglutarate (2OG) and Fe(II)-dependent oxygenase superfamily protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37