SimpleSearch - Line and FST details
Line specific information
| Line ID | 541B10 |
| Vector Used | pAC161 |
| Line Availability | available as T3 set from NASC (N451862) |
| Segregation Analysis | 50:10:7 |
| Confirmed for Hit | At1g42990 |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 83531, 83532, 83533, 83534, 83535 |
Gene hit At1g42990
| Sequence (A. th genome BLAST matches underlined) | >74-K023854-022-541-B10-8409 GNAGCCATTTACAATTGAATATATCCTGGGCCACAGGGATCCTCTCTATAGTGAGTTGAG AATACTGAGCTAGATCTCATCAAATACCCATAACACCCATCTTGGCTGTGTACCTGAGCG ATATTAGACAGAGTACTTTCAACAGCGAAATACAAAGCGAGAGAGAGAAAACTATTAGAC ACTCCTCTACAACTCAAAGTGCGCAAAAGAAGCAGTTAAAAAAGGCGTTGTCACGCCACA AGGGTTAAGATTTGGTATTTCCTCCTAGGGGATCCTCCCGAGCCTGAGCCATCCTCCCCA TAGTGAGACGAGTGTATCCTACACTCTGTAGGTGTGCAAAAAGTAAATGACACAGAGATT TGTTAACGAGGTTTGGTATCATGCTACATCCCCGGCGCGTAACCCAGAAGTAACTCCACT A |
| GenBank Accession | BX891331 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:16135868 - go to primer design |
| BLAST e Value | 3e-56 |
| Hit Clone Code (BAC ID) | F13A11 |
| Hit Gene Code | At1g42990 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | basic region/leucine zipper motif 60 |
| Insertion Classification | TS2TE (3') |
| Confirmation Status | confirmed, show confirmation sequences |
| Primer and wt-amplicons | show primer details |
Gene hit At3g30839
| Sequence (A. th genome BLAST matches underlined) | >74-K023956-022-541-B10-8409 CATTTAAATTGAATATATCCTGATCACAAAGTATTCATTTTCAACCTATTTGTAATTACG AGACTGACCGACCGATAACTAATTATTATACTTATGGTCATGCTCTAGCGCTCATATCAT CCCTCCCTATATTGATTCCACAAATCCCTCTTTACAGCACTACACAATTCCCCCTCATCT AAACCCTAAATGGCTTGAAACTGCCGCACAAAAAATACATAACATTGGAAAAGGATCCCA AAAAAACCTACTTTGTGAAGTTACTAACTGTGTGCTATGGGATCCTCCCTATAGTGAGTC CAATCAATCAGAGCCAAAAAATGCCAAAAGCCATACCACCAAAAATAAACCCACACAGAA ACCCAAGAACAACTACCCTTACACAGCATCCAACATCCCACACTCCAATTAACACATACA AAACGACGCCG |
| GenBank Accession | BX891332 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:12576557 - go to primer design |
| BLAST e Value | 4e-43 |
| Hit Clone Code (BAC ID) | K11J14 |
| Hit Gene Code | At3g30839 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | |
| Insertion Classification | TS2TE |
| Confirmation Status | unknown |
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Last Updated on 10.06.2021 13:37 |
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