SimpleSearch - Line and FST details


Line specific information

 
Line ID 543H03
Vector Used pAC161
Line Availability available as T3 set from NASC (N452119)
Segregation Analysis 50:49:37
Confirmed for Hit T21L8
Parent of DUPLO pair none
Parent of pair(s) none
Note

Gene hit At4g34890

 
Sequence (A. th genome BLAST matches underlined) 
>24-K021955-022-543-H03-8409
GNAGCCATTTACAATGTGAATATATCCCGGATAGCCTAGACACGAAGACCCGAGCCCCGG
CTTACCATTGCTCATCCCACTATGACATCACCTTCTGTAATGACCATCCTTATCTATGAG
GAAGATACTTGCGAAGAATAGTGTCACTGTCGTCAGTCTGCTACTTCTATGAAGACATCT
CCTTTGTGTACCTGATTGGAAAAGGTGCTTGTACCGTCATGCTCCACGAGGAGGCTCCTC
TGACACTCCTCGAATATCTCAGAGGTGCGTATCAACTTCTTTGATTAATATCCAGTTGCT
GGGGATGATTTCAAGTACTCAAACGAGTTTAATTTTCACTTCAATTTTGAACTGATACTC
TCTATGAAAATTCTGTTTTTTGGATTCCTATGGGATCCTCCCTATAGTGAGCTCATATGA
CATAGTAAGACGGACATCACGAAAGATTGATATATACAACAAGAGAACAGGAGGAACTTT
ACTCATAATGAAGAGGGAATAGCATATAGCTGACACGATGATCAACATGATCATACACCA
AAATAGGATAAAGTACAGAACAGAGAA
GenBank Accession BX650167 [GenBank]
Graphic View Graphic view of gene At4g34890
Predicted Position of Insertion Chr4:16625083 - go to primer design
BLAST e Value 1e-67
Hit Clone Code (BAC ID) F11I11
Hit Gene Code At4g34890 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation xanthine dehydrogenase 1
Insertion Classification TS2TE (5')
Confirmation Status failed

Gene hit T21L8

 
Sequence (A. th genome BLAST matches underlined) 
>24-K021951-022-543-H03-8409
AACAACATATGAATATAATGCTATGTATTATTTCCGAGCTTCACGTGTAGAAGATACTGG
AGAAGAAGAATGATATATTTGTCAGTTTAGTAATTCTATGGGATCCTCCCTATAGTGAGC
GTGATTGGAACACCTGCTTGGTCCGTCTTGCTCCTCGAGGATGCTCCTCGTGGGTGGGGC
CCAATATTGGAAGAAGCGTCCCCCGCAGAAGGCTTCAACTTAGGGCATTGAATGAGCTAG
AAAAAGACATTTTTATGACCCACCATCATTCGCACAGAAAGAAAGAATAGGGAGGAAAGA
AAGTAGTGCCAGAGATTGAAATGAGTCATCTAGAGAGTGCCAGAGATAGCGGGGGGGCCG
CCACGAAGACATAATAAAAAAG
GenBank Accession BX650166 [GenBank]
Graphic View Graphic view of sequence BX650166 of line 543H03
Predicted Position of Insertion Chr3:17475745 - go to primer design
BLAST e Value 1e-05
Hit Clone Code (BAC ID) T21L8
Insertion Classification Genome Hit
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX650166 [GenBank]


Last Updated on 10.06.2021 13:37