SimpleSearch - Line and FST details


Line specific information

 
Line ID 544E06
Vector Used pAC161
Line Availability available as T3 set from NASC (N452182)
Segregation Analysis 50:2:2
Confirmed for Hit At5g67360
Parent of DUPLO pair none
Parent of pair(s) 5454, 5472, 5474, 5508, 5566, 5585, 5592, 10409

Gene hit At2g19560

 
Sequence (A. th genome BLAST matches underlined) 
>45-K022299-022-544-E06-8409
GTGCCCTGCTCCGCCTACGAGCTCAACTACTATCATAATCCGTACGTATGTTGCTATCTC
TCCTGCGCTATGGTATATCGCTACTGTCTGACTATACCTTACTATAATATAACTAAAAAC
AACGCTGCACAGACGTGTTTCGTTTCACTGACTCTCGGCTTAATTATTTCGCAGGCCGTC
TCGCAGATCTGCTGTTATATCGACGCGAGCATATCTCATCTCTCATCAATGCAATAGTGT
CACCTTCGCAATAGTACCATTTCTCGCGGATAGGTATCGTCCAGACGAGTGTCAGGACGC
TGGAATATTGTGTGTTTATATTTTAGATTCAGATTATTTCATAAAGCAATTCTTAACTTG
ATATCTGCAGTTGATAAACATTTCTGGTATATTATGAAATCCCTATCACATGTATCCTCA
CTCATCTTCTTATTATCTTCTGTTTATTCTT
GenBank Accession FR811933 [GenBank]
Graphic View Graphic view of gene At2g19560
Predicted Position of Insertion Chr2:8467899 - go to primer design
BLAST e Value 0.001
Hit Clone Code (BAC ID) F3P11
Hit Gene Code At2g19560 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation proteasome family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At5g67360

 
Sequence (A. th genome BLAST matches underlined) 
>45-K020964-022-544-E06-8409
CATTTACAATTGAATATATTCAGGAGATGGTTTAACACCGACGACTGTTCCTAAGATTGA
AATCGAAGCGGTGGGATTAGGATCAGTAGTCACGTAATGCCGGATTATATCACCGGCTTT
TTCACCAACGGTGGTCGCCGGTAACAAATGAGCATCCGCAACAAGCTCTTCACCATTCGC
CGCAGTGTTAGCCAGAATCATTCCAACTCCACCTGCTGCTTTAACCACATCACCTTTCTG
AACTCTATGGGATCCTCCCTATAGTGAGTCGTATTACTCACCCTTTACTTTCTCCGGGAT
CAAAGTTCCGGTCATACAGAGATTACCATTAGTAGCATTACTATGGGATCCTCCCTATAG
TGAGTCGTATTACTCATCCGGTAATGCTTCTCCTTTAAACAAACAAACTCCGGTGAAATT
CTTGCCGTTACCGAGAATCGCAAGCGCCGGAAAATCCCGATCTAAAGTACCAGCACCAAC
AGTTGTGATCCATGGAGCTACGTTTGATAAACTA
GenBank Accession BX572247 [GenBank]
Graphic View Graphic view of gene At5g67360
Predicted Position of Insertion Chr5:26873015 - go to primer design
BLAST e Value 3e-124
Hit Clone Code (BAC ID) K8K14
Hit Gene Code At5g67360 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation Subtilase family protein
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details


Last Updated on 10.06.2021 13:37