SimpleSearch - Line and FST details


Line specific information

 
Line ID 552C05
Vector Used pAC161
Line Availability available as T3 set from NASC (N452925)
Segregation Analysis 46:27:16
Confirmed for Hit At1g15950
Parent of DUPLO pair none
Parent of pair(s) 5470, 5500, 5586, 5674, 5676, 7599, 10371, 10372, 10410

Gene hit At1g68710

 
Sequence (A. th genome BLAST matches underlined) 
>35-K021687-022-552-C05-8409
GNAGCCATTTACATTGAATATATCCTGATCACCAATGACGTTGCAATTGAAGATGCACCT
TCTGTGGCCTGAGTCATGACATATTCAGTTTTCTCTATCTGACAGATTTGCCACTTCTTC
CACAAAACCATTACTCTTTGGTTACACACATTTCTTAGATGAACCATACACAACATTCTC
ATCGACCCCTGCCTACAACGACTGGTTTCTATCTCTTTATAATGTCTTTTTCTCGTCCCT
TCCTGTTATTGCTCTTGGTGTCTTCGACCAGGATGTCTCTGCACGTTATTGTCTAAAGGT
AAACATTACAACAGCTTTATCTTCTCACCAGTCAAAAAATTTGTGCCAACTTCTTCCTTT
TTTCTTGGTTTTGCAGTTTCCGTTGTTATACCAAGAAGGTGTGCAAAATGTTCTGTTCCG
CTGGCGCAGGATACTTGGCTGGATGTTCAACGGATTCTACAGAGCAGTAATCATTTTCTT
CCTCTGCGAAAGCTCTCTCCAATCTCATGGTTTCGACCGCCATGGACAAAACACCGGGAA
GAGAA
GenBank Accession BX650734 [GenBank]
Graphic View Graphic view of gene At1g68710
Predicted Position of Insertion Chr1:25794465 - go to primer design
BLAST e Value 0.0
Hit Clone Code (BAC ID) F24J5
Hit Gene Code At1g68710 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation ATPase E1-E2 type family protein / haloacid dehalogenase-like hydrolase family protein
Insertion Classification CDSi
Confirmation Status unknown

Gene hit At1g15950

 
Sequence (A. th genome BLAST matches underlined) 
>35-K021661-022-552-C05-8409
TTTACATTGAATATAACCAATTGAATATATTCATTTTAAAGTCAAATGTAATAAAAACAT
CACAACAAGATGGAACTTTCAACGTCCTAAAATTAAAATACTTGACGAAACTGGCAAAAA
CCAAATATTCAATGAAGAATAATATTGCTATGGGATCCTCCCTATAGTGAGTCGTATTAC
TCCCTGGACTACCCTGATTTGGTACCTCTATGGAATCCTCCCTATAGTGAGTCCTTGGGA
TACCCACTTTATCGGGCCTATGGGGAGTTTTGGTTATTTGGTATCTTCCAGGTATTGGGA
AAATAAAGAGACTGTGTAATCTGGGGAATAAGGGGGTATGGGGACCTGGCGGGATTCGGG
G
GenBank Accession BX650733 [GenBank]
Graphic View Graphic view of gene At1g15950
Predicted Position of Insertion Chr1:5479649 - go to primer design
BLAST e Value 3e-62
Hit Clone Code (BAC ID) T24D18
Hit Gene Code At1g15950 [Araport] [TAIR] [MIPS] [SIGnAL]
Gene Annotation cinnamoyl coa reductase 1
Insertion Classification CDSi
Confirmation Status confirmed, show confirmation sequences
Primer and wt-amplicons show primer details
Other FSTs Supporting this Hit BX650733 [GenBank]


Last Updated on 10.06.2021 13:37