SimpleSearch - Line and FST details
Line specific information
| Line ID | 556E11 |
| Vector Used | pAC161 |
| Line Availability | not available |
| Segregation Analysis | unknown |
| Parent of DUPLO pair | none |
| Parent of pair(s) | 59132, 92619, 92620, 92621 |
| Note |
Gene hit At1g19340
| Sequence (A. th genome BLAST matches underlined) | >85-K021770-022-556-E11-8409 GCTTCAACCAAAGTTCCTCTCTCACTGATTATTCAGGTGACAGAGAAATGATTTGACTTA CTTCGGTAAAATGGTAACCTATGGGACCCTCCCTATAGTGAGATGAACGCCAGCCTGAGT GAGCGGTCATAGAACCCTGAGTCCATAGCCCAGTAGGGGTTGTACGATTGAAAAAGATGG TGCTCCCTTTTCTAAACGCATCTAGGATCCGCCCGACGAATTGAAAGGACTAACGTCTGA AGCCAATTATTCTCAATTCGGAAATCTTATATTTCGGCGGGTCGACATTCGTTTAAGAGA AGGATCCATTTTGTAACAAGTACCAGTGGGGATCCGCACGAAATACACGACAAAGCGGAG AAGAAACTTCGACTAACTACAGAGATCGAGAATGCCTGAGATACCATATACCCACGACTA GTGGGACAAAAACAGAAAACGTCCCTTTCCGGAAAGAAAACATGGGGGTCCGCTCTGAAA AAGACGAGCGAGGACAATCCATCATATCTTCGAAAC |
| GenBank Accession | BX651250 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr1:6686393 - go to primer design |
| BLAST e Value | 2e-11 |
| Hit Clone Code (BAC ID) | F18O14 |
| Hit Gene Code | At1g19340 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | Methyltransferase MT-A70 family protein |
| Insertion Classification | CDSi |
| Confirmation Status | failed, line belongs to a contamination group, please check line 570E08 |
Gene hit At3g06630
| Sequence (A. th genome BLAST matches underlined) | >85-K025925-022-556-E11-8409 NNTTTCGTCGATAATCCGGACATGAAGCCTTTACATTGAATATAGCCTGAAGAATGTGAG AGCGCTGATGGTTGGGATGGTCGACTAGCACCTGTGCCTTTGTGCACTGAGCTTGTGCCC AAGCTACTTTCACAGCACTCGTTACGGACTATGGATCACAGCCGGTATGGGAGCCTCCCT ATAATGCGGCATCCCGAGCCTAGTATGGGTCGTATGGGATCCTCCGGGGGGGGGGGGCAA AGAACTCTATCTATTTTTGATCTCATATGACATCCTCCCTTGACTGAGTNACATTGTGAG TATTAATTATATGTTCCTTANACATTTAATTATGAGTTGCTCTATGTGACTACTTGTTTG TATTTTTCTTGTAAATCTTCTTGTTAACTCTATTTGACTCGGTCACCGTATGGAATCCTC CCTATAATTAGTAAACAATGGGGGGGGGGGAAGTTCATTTTATCCGCATAAAAAACGCAC AAGTCCAAGAAATCTGTTTAAAAAAGAATCGTCTCAATACACCACTGAAACTAAAATCCT T |
| GenBank Accession | CR397960 [GenBank] |
| Graphic View | 
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| Predicted Position of Insertion | Chr3:2071792 - go to primer design |
| BLAST e Value | 4e-55 |
| Hit Clone Code (BAC ID) | F5E6 |
| Hit Gene Code | At3g06630 [Araport] [TAIR] [MIPS] [SIGnAL] |
| Gene Annotation | protein kinase family protein |
| Insertion Classification | CDSi |
| Confirmation Status | unknown |
|
Last Updated on 10.06.2021 13:37 |
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